>PF04661 (259 residues) KQQDGEEPAHATCGGTVEFLKTLSKSTEKCIDSVTLLPSQYPACSLINIKLVESLASRMT STYILLEGEAKIYKNKKSDCRGDNAYFLMIKPTAASPMMYQLLECVYGNIRDGKRIPPSL CGINVAELEEKTLNKGCIFVNKLSGAVVEYKINGGKSKVRLIDEELESLAKRDKQISKTI LVPIVFYRNSSTSKITFALKKLIIERDFSANVVDVDGKNEKISMVESTEEDLSRGLGVME LDDCIVEEEEEVESSLFNV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | KQQDGEEPAHATCGGTVEFLKTLSKSTEKCIDSVTLLPSQYPACSLINIKLVESLASRMTSTYILLEGEAKIYKNKKSDCRGDNAYFLMIKPTAASPMMYQLLECVYGNIRDGKRIPPSLCGINVAELEEKTLNKGCIFVNKLSGAVVEYKINGGKSKVRLIDEELESLAKRDKQISKTILVPIVFYRNSSTSKITFALKKLIIERDFSANVVDVDGKNEKISMVESTEEDLSRGLGVMELDDCIVEEEEEVESSLFNV | |||||||||||||||||||
1 | 4qanA | 0.12 | 0.11 | 3.99 | 0.57 | SPARKS-K | PAPTSDYSYYFPLTSAKAYIEQFEELSTEILEVLEIAEKKEKAAQESELEIYVKCGEQLGFTAVQYEKNWKIHSEREAKKTYVLPYFQ-APISEKTP--QRAVEQFIYAIEKG-DLTRALAFATTESSQDELLKKQGEYAKELKTLYGFLGTEDARLYGKS-EEQLNKLRGKNPEYVYLDLIKVIPIENTETVKQYAGLYSYNGKNYLTGYTLCRQEDGWQIQSLSAP----ALSLESGEVRLSKEESRKTSEQSVLKA | |||||||||||||
2 | 5uqjA | 0.11 | 0.08 | 2.76 | 0.61 | FFAS-3D | -----TPAIHRQLQKIICKYKETFMK----VDFDPLFISHLGAPKPLHVSLRNGLRNNEITPFLQICSYPKLYISERAN-----TLYLGLPVSENKAQISPFKTIIAEALQK----------SGISNYQDLIVSRQNLHVS------IAIASNPSKATLKRYQQLNETMGALLLL------------NNDFAYKLEFLVNSI---------YCDENRHSIRIPFN---------------------------------- | |||||||||||||
3 | 1k8hA | 0.17 | 0.07 | 2.40 | 0.42 | HHpred | -----------------------------------------------------------------------IAENKEAKAKILETYEAGIVLKG--S--------EVKSLREGT------VSFKDSF---VRIENGEAWLYNLYI--APYNHDPLRKRKLLLHKEIMRLYGKVQE-KGYTIIPLKLYWKNNKVKVLIALAKG--------------------------------------------------------- | |||||||||||||
4 | 3t58A1 | 0.11 | 0.09 | 3.34 | 0.54 | MUSTER | -SVLYSSSDPLTLLDADSVRPTVLGSSS--AWAVEFFASWCGHAIAFAKELANDVKDWRPANLAVLDCTVRFFQAFTKNGSGAT-L------PGAGANVQTLRMRLIDALESHRTWPPACPPLEPAK--LNDIDG---FFTRNKADYLALVFEREDSYL--GREVTLDLSQYHA-----VAVRRVLNTESDLVN-KFGVTDF------SCYLLLRNGSVSRVPVLVESRSFYTS---LRGLPGLTRDAPP--------- | |||||||||||||
5 | 2r6r1 | 0.16 | 0.12 | 3.87 | 0.84 | CNFpred | ------------TGAAPVIAKTAKEMGILTVAVATLPFRFGPRKMEKALKGLEKLKES-SDAYIVIHND-KIKELSNRTLTIKDAFKE------VDSVLSKAVRGITSIVVT-----PAVINVDFADVRTTLEEGGLSIIGM-----GEGRGD--EKADIAVEKAVTSPLLEGNTIARRLLVTIWTSED-PEAEIIFGAVLEPEQDFIRVAIVATDFPEEKFQVGE--------------------------------- | |||||||||||||
6 | 2pffB | 0.15 | 0.14 | 4.57 | 0.93 | HHsearch-2 | ENPNTPDKDYLSCIGVIVTAKLLGPGERSYLKGATGHSQGLVTAV--AIAETDSWESFFVSVRPMLQEQVQDYVNKTNSHLPGKQVEISLVVVSGPQSLYGLN----LTLR-KAKAPSGLDQSRIPFSERKKFSNRFLP--VA--------SPFHSHLLVPASDLINKDLVKNSFNAKDIQIPV--YDTFDGSDLR-VLSGSISERICIIRLPVKWETTTQFKATHILDFGGASGLGVLTHDVAGTLDINPDDDYGFKQ | |||||||||||||
7 | 3tnfB | 0.11 | 0.11 | 4.02 | 0.72 | Neff-PPAS | EKHKGDEKTVQSLQREHHDIKAKLHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHHNGLNLKLANLQDMLAVHRKEKSFFNEKGEEV--TSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPLVHHNKGLETTIHKE | |||||||||||||
8 | 1k8hA | 0.17 | 0.08 | 2.65 | 0.63 | HHsearch | ---------------------------------------------------------------GKSDKIIPIAENKEAKAKILETYEAGIVLKG--S--------EVKSLREGT------VSFKDSF---VRIENGEAWLYNLYI--APYNHDPLRKRKLLLHKEIMRLYGKVQE-KGYTIIPLKLYWKNNKVKVLIALAKLY-DR----------------------------------------------------- | |||||||||||||
9 | 3t58A1 | 0.10 | 0.08 | 3.17 | 0.53 | SP3 | -SVLYSSSDPLTLLDADSVRPTVLGSSS--AWAVEFFASWCGHAIAFAKELANDVKDWRPANLAVLDCACREFNIAGFQAFTKNGSGATLPGAGAN--VQTLRMRLIDALESHRDTWPP-ACPPLEPAKLNDIDG---FFTRNKADYLALVFEREDSYLG--REVTLDLSQYHA-----VAVRRVLNTESDLVN-KFGVTDFP-----SCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRDAPP----------- | |||||||||||||
10 | 5njlA | 0.11 | 0.10 | 3.62 | 0.80 | PROSPECTOR2 | VKKETITKK--EATELVSKVRDLGSQVGQPIYEIKVGETLSKL---KIITNIDELEKLVNALGENKELIVTITDKGHITNSANEVVAEATEKYENSADLSAEANSITEKAKTETNGIYKVADVKASYDSAKDKLVITLRDKTDTVTSKTIEIGIGDEKIDLRVNKIVKLGVAGAKNIDDVQLAEITIKNSDLNTVSPGTSKSIGKYKFTIKYTDASGKAIELTVESTNEKDLKDAKAALE------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |