>PF04655 (249 residues) RWKVSAPELIAETFSSRIWKVVRDDGSPAVVKALKPFDDVADELRGEHFLAWRRGEGAVR LLGRDGHSMLLEYAGETLLTQVLDEQGDNAATAIAAELMTKLFSPSQHPYPPELQPLTER YTSLFRKAATDRGAGHASIYVEAAAIAERLLDNPHDIRPLHGDLHHDNILHGPRGWLVID PKGVLGNPGFDAANMFYNPLDRDDLCLDPERIAHMAEVFAKTLGESPAAILDHAIAYGCL SAAWHHEDD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | RWKVSAPELIAETFSSRIWKVVRDDGSPAVVKALKPFDDVADELRGEHFLAWRRGEGAVRLLGRDGHSMLLEYAGETLLTQVLDEQGDNAATAIAAELMTKLFSPSQHPYPPELQPLTERYTSLFRKAATDRGAGHASIYVEAAAIAERLLDNPHDIRPLHGDLHHDNILHGPRGWLVIDPKGVLGNPGFDAANMFYNPLDRDDLCLDPERIAHMAEVFAKTLGESPAAILDHAIAYGCLSAAWHHEDD | |||||||||||||||||||
1 | 4h05A | 0.14 | 0.14 | 4.63 | 1.51 | SPARKS-K | RYPCEWVVVEDGASGAGVYRLRGGG-RELFVKVAALGVGLLGEAERLVWLAEVG-IPVPRVVEGGGAWLVTEAVPGRPASARWPREQRLDVAVALAGLARSLHALDWERC--PFDRSLAVTVPQAARAVAEGSVDDEERGERLLAELERTRPADEDLAVCHGDLCPDNVLLDPEVTGLIDVRVGRADRHSDLALVLRELAHEEDPWFGPECSAAFLREYGRGWAVSEEKLAFYRLLDEFF--------- | |||||||||||||
2 | 3g15A | 0.16 | 0.15 | 5.08 | 2.12 | FFAS-3D | -WEFHI-SVIRGGLSNMLFQCSLPDPRKVLLRLYGAAEAMVLESVMFAILAERS--LGPKLYGIFPQGRLEQFIPSRRLDTEELS--LPDISAEIAEKMATFHGMKMP-FNKEPKWLFGTMEKYLKEVLRIKFTEESRLPLELENLRSLLESTPSPVVFCHNDCQEGNILLEKQKLMLIDFESSYNYRGFDIGNHFCEWMYDYSYEKTKKQQLHFISSYLPAFQNDLLEVNRFALASHFLWGLWSI--- | |||||||||||||
3 | 2qg7D | 0.14 | 0.13 | 4.55 | 2.17 | HHpred | --DSLEFQIINGG-TNILIKVKDMSKAKYLIRLYGPKTNREREKKISCILYN-KNI-AKKIYVFFTNGRIEEFMDGYALSREDI--KNPKFQKLIAKNLKLLHDIKLNENLTRPSFLWNTIWKYFHLLNEICKLDFDVLRDSIVEVESLCKRENSPIVLCHCDLLSSNIINTVGSISFIDFYSCPMERAYDIANHFNEYAGFNCLTPSKEEEYHFIMHYLGTDDEEIREIQPFYICSHINWGLWSLLQ- | |||||||||||||
4 | 4h05A | 0.17 | 0.16 | 5.40 | 1.56 | MUSTER | RYPCEWVVVEDGASGAGVYRLRG-GGRELFVKVAALGVGLLGEAERLVWLAEV-GIPVPRVVEGGGDWLVTEAVPGRPASARWPREQRLDVAVALAGLARSLHALDWERCPFDRS-LAVTVPQAARAVAEDLEDLDEERGERLLAELERTRPADEDLAVCHGDLCPDNVLLDPRTTGLIDVRVGRADRHSDLALVLRELAHEEDPWFGPECSAAFLREYGRGWAVSEEKLAFYRLLDEFF--------- | |||||||||||||
5 | 3csvA | 0.16 | 0.15 | 4.93 | 1.65 | CNFpred | ----------------RYQRLRSPTGAKAVLMDWSPEGDTQPFVDLAQYLRNL-DISAPEIYAEEHGLLLIEDLGDALFTEVINNDQEMPLYRAAVDLLIHLHDAQTPELARDPETLSEMTRLAFSEYRYAILDAAEDNRKRFEHRFAQILSAEGDMVFVHRDFHAQNLLWLPERVGVIDFQAKLGHRAYDLVSLLQDARRD----VPAQVEAQMIDHYIQATGVDESHFRSAYAVIAVQRNMRILGIF | |||||||||||||
6 | 3g15A | 0.15 | 0.15 | 4.99 | 0.73 | HHsearch-2 | AWRGFHISVIRGGLSNMLFQCSLPDTRKVLLRLYGAAEAMVLESVMFAILAE-RSL-GPKLYGIFPQGRLEQFIPSRRLDTEEL--SLPDISAEIAEKMATFHGMKMPFN--KEPKLFGTMEKYLKEVLRIKFTEEYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEQKLMLIDFYSSYNYRGFDIGNHFCEWMYDYRKYPTKKQQLHFISSYLPAFQNDLLEVNRFALASHFLWGLWSIVQA | |||||||||||||
7 | 4h05A | 0.15 | 0.14 | 4.74 | 1.89 | Neff-PPAS | --GCEWVVVEDGASGAGVYRLRGGG-RELFVKVAALGAGVGLLGEAERLVWLAEVGPVPRVVEGGGDWLVTEAVPGRPASARWPREQRLDVAVALAGLARSLHALDWERCPFDR-SLAVTVPQAARAVAEGSVDLKGWSGERLLAELERTRPADEDLAVCHGDLCPDNVLLDPEVTGLIDVGVGRADRHSDLALVLRELAHEEDPWFGPECSAAFLREYGRGWAVSEEKLAFYRLLDEFF--------- | |||||||||||||
8 | 3g15A | 0.15 | 0.15 | 4.98 | 1.04 | HHsearch | AWREFHISVIRGGLSNMLFQCSLPDTRKVLLRLYGAAEAMVLESVMFAILAE-RSL-GPKLYGIFPQGRLEQFIPSRRLDTEEL--SLPDISAEIAEKMATFHGMKMPFN--KEPKLFGTMEKYLKEVLRIKFTEEYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEQKLMLIDFYSSYNYRGFDIGNHFCEWMYDYRKYPTKKQQLHFISSYLPAFQNDLLEVNRFALASHFLWGLWSIVQ- | |||||||||||||
9 | 3hamA | 0.12 | 0.12 | 4.10 | 1.87 | PROSPECTOR2 | MIKINELRYLSSGDDSDTFLC----NEQYVVKVPKRDSVRISQKREFELYRFLENCKIPAVVYQSDRFNIMKYIKGERITYEQYHKLSEKLAYDEATFLKELHSIEIDCSVVNKKDKFLQDKKLLISILEKEQLLTDEMLEHIETIYENILNNKYTPCLVHNDFSANNMIFRNNRLGVIDGDFNVGDPDNDFLCLLDCSTDDFG--------KEFGRKVLKYYQHKERKAELNDVYWSIDQIIYGYERK | |||||||||||||
10 | 3atsA | 0.11 | 0.11 | 3.87 | 1.96 | SAM | --EVTVESGVSTGMSSETIILTARWQQKLVARVAPAA-RLDHQFEVIRLVGELTDVPVPRVRWIE-PFFLMDYVEGVVPPDVAPAERQRQLQDATVAALATLHSIPNAQNTFSFLTLHRHFNWVRSWYDFAVEGIGSPLLERTFEWLQSHWPDDREPVLLWGDARVGNVLYRDFQVAVLDEMVALGPRELDVAWMIFAHRVFQE-----MREDDVRATYQALTGVELGDLHWFYVYSGVMWACV----- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |