>PF04646 (251 residues) QNSKYSFDMAFGGGGFAISYPLARVLAVSFDSCLMRYSHVYGSDSRVFSCLVELGVRLTH EPGFHQVDIRGDLFGMLSAHPLAPLLSLHHLDYMEPIFPNMNRTQALEHLFGAVKVDPER ILQHIVCYDHSKLWTISISWGYAVQVVESNKLLPDLLALQRTFMPWKRSANSGQYMFNTR ESPKNQCERPTLFFLESVFSDTDRITSNYNRYSFKNCSRRSSSKNLELVRVFSQKLELDV GKLQAPRRHCC |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | QNSKYSFDMAFGGGGFAISYPLARVLAVSFDSCLMRYSHVYGSDSRVFSCLVELGVRLTHEPGFHQVDIRGDLFGMLSAHPLAPLLSLHHLDYMEPIFPNMNRTQALEHLFGAVKVDPERILQHIVCYDHSKLWTISISWGYAVQVVESNKLLPDLLALQRTFMPWKRSANSGQYMFNTRESPKNQCERPTLFFLESVFSDTDRITSNYNRYSFKNCSRRSSSKNLELVRVFSQKLELDVGKLQAPRRHCC | |||||||||||||||||||
1 | 2j0aA | 0.22 | 0.10 | 3.26 | 1.43 | HHsearch-2 | RDVYVGFWFATGGAGFCINRQLALKMVPWASGSVDTSLIRLPDDCTVGYIIEKLGGRLQPSPLFHSHLETLQGAAQLPE---QVTLSYGVFEGLNVPFSHPSRFRSLHCLLYPTPWCPLL----------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
2 | 2j0aA | 0.23 | 0.11 | 3.37 | 1.70 | HHsearch | RDVYVLFWFATGGAGFCINRQLALKMVPWASGSVDTSAIRLPDDCTVGYIIEKLGGRLQPSPLFHSHLETLQGAAQLPE---QVTLSYGVFEGLNVIFSHPSRFRSLHCLLYPTPWCPLL----------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 2q43A1 | 0.08 | 0.07 | 2.83 | 0.62 | SPARKS-K | -----------KLLEFAKSPEVFDWMVKIRRKIHENPELGYETSKLIRSELELIGIKYRYPVA------ITGVIGYIGTGEPPFVALRADMDALWEHKSKIAGVTMLLGAAKILHEHRQGTVVLIFQPAKNVEAIFGIHLSAASRAGSFLTNKDLYKQFKKVVRDLLGQE-------AFVEAAPVMGSEDFSYFAETIPG---HFSLLGMQDETNGYASSHSPLRINEDVLPYGAAIHASMAVQYLKEKAS | |||||||||||||
4 | 2j0aA | 0.29 | 0.11 | 3.27 | 0.51 | FFAS-3D | ----SLFWFATGGAGFCINRQLALKMVPWASGSDTSALIRLPDDCTVGYIIECLGGRLQPSPLFHSHLETLKLPGPF-SHEEDPFRSLHCL-----LYPDTP----------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
5 | 2j0aA | 0.23 | 0.10 | 3.25 | 0.98 | HHpred | ---PSLFWFATGGAGFCINRQLALKMVPWASGSHDTSLIRLPDDCTVGYIIEKLGGRLQPSPLFHSLELQLLGAAQLPE---QVTLSYGVFEGLPGPFSHPSRFRSLHCLLYPTPWCPL------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
6 | 4ykeA1 | 0.09 | 0.08 | 3.17 | 0.57 | MUSTER | HVGYEERDPIRK-------DDSWRTFDEIMQLARTKFHDNKPSRKAMYQVMRSLR-KNCLGMKPCELEFLSDPAEVFEGAFPHVNYYDPDINVSIPVFSDPSGDGHLCSLDLLQVAGLVNYFGRVPEADNIHVKPILLQKGTKLALY-SNVRDERIHRTFRDKVRFYRPTGDWHYAHTPTGYLSENMLPDLVILIDPKKNPETGFHVMQP--SSIATSLVPGEAVPKSFEVEKIPLRTV------------ | |||||||||||||
7 | 5x3vA | 0.11 | 0.05 | 1.87 | 0.68 | CNFpred | ----------------HAIAAVAVALKQACTPMFREYSLQLKNARAMADALLERGYSLVSGGTD------------------NHLVLVDLRPK-------GLDGARAERVLELV-----SITANKNTCP-ITPGGLRLGAPALTSRQ---FREDDFRRVVDFIDEGVNI---------------------------------------------------------------------------------- | |||||||||||||
8 | 5a4jA2 | 0.11 | 0.10 | 3.43 | 0.43 | HHsearch-2 | PNLVQTFAIAHGCNSIIA-TKMALKLA---DYVVTEA--GFGADEKFLDIKCRADIRAVYNGGLNQENLDALKKGLIKYG-IPTVVAINQFPTDT-----ERELALVQEEVRIIEEGKNNF--KP-IYDLDMGITTIAIYGADGVEFAPA-ALKEINTLEEL--GFKNVPAKTQYSLTDDPKLLGP--TGFKINVRNVKISGAGFVVALTGAIMRPAAEKIDVDVNGKIAGLF------------------ | |||||||||||||
9 | 3d03A | 0.07 | 0.06 | 2.47 | 0.64 | Neff-PPAS | -----FRSRGEKLYGFIDVNAANADVVSQLNALRERPCGRPEEYQVARQILGSLNYPLYLIPGLQPLCPQLGANNMRCAVDDFATRLLFIDSSRAGTSKGWLTDETISWLEAQLFEGGDK-------------PATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISC-----PTEER-------------- | |||||||||||||
10 | 6eu4A1 | 0.18 | 0.03 | 0.91 | 0.37 | HHsearch | GVYVFALAKPYVGGGHRIYVASR-----------AA-E-NDGFLCINGWV---L-----------Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |