>PF04609 (270 residues) YETLTYQGGVHRHEEMKELIEDLGGFVLQENMLQMDLILTLAVPIEDVDKVREKARELLG KVKVAPMAGTEIAIVSPTLARHHLPHSACDISEYLRRYGAKDNMIGLARGAGKGISRISE DEKRLIEEHDLAVFALGSFEQCIKDKAHLFSDINIPVVVTGSPEKIDLSELPGADAYVGG LGRIPRRLKRGEDIRALRKLVEVVEDILDRRRREMAADPPLVPSILVKTEIENQVPAVKE VYSPTPVTSQLDGVRVKLNYDRYHDEIADV |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | YETLTYQGGVHRHEEMKELIEDLGGFVLQENMLQMDLILTLAVPIEDVDKVREKARELLGKVKVAPMAGTEIAIVSPTLARHHLPHSACDISEYLRRYGAKDNMIGLARGAGKGISRISEDEKRLIEEHDLAVFALGSFEQCIKDKAHLFSDINIPVVVTGSPEKIDLSELPGADAYVGGLGRIPRRLKRGEDIRALRKLVEVVEDILDRRRREMAADPPLVPSILVKTEIENQVPAVKEVYSPTPVTSQLDGVRVKLNYDRYHDEIADV | |||||||||||||||||||
1 | 1dvjA | 0.12 | 0.09 | 3.27 | 0.54 | SPARKS-K | MNRLILAMDLMNRDDALRVTGEVREYIVKIGYPLCRIIADFKVPETNEKICRATFKA-----------GADAIIVHGFPGA----DSVRACLNVAEEMGREVFLLTEMSHPGMFIQGAADEIARMGVDLGVNYVGPSTRPERLSRLREIIG-QDSFLISPGGAQGGDPGELRFADAIIVG-----------------RSIYLAPAAAAAGIIESIKDLLIPEDPAANKARKEAELAAATA------------------------------ | |||||||||||||
2 | 4y90A | 0.14 | 0.11 | 3.66 | 0.71 | FFAS-3D | -------------TEARSWAEE----LTTKYAPAEGVDLAVLAPALDLSALAAN-------------LPAGIAFGGQDVSAHESGAYTGEIAAMLKDAGASCVVVGHSERHDESDATVAAKARQAQANGLLPIVCVGEVPQTLAQLRGSLEGVGADVVVAYEP--------------VWAIG-----TGKTATADDAEELAAAIRGALREQYGARAEGIRSVKPENIAEICGKP---------------NVNGALVGLKVPDVLGMLDAL | |||||||||||||
3 | 4zo6A | 0.20 | 0.17 | 5.33 | 0.42 | HHpred | -------------LRMLNLKNDLGLFE--DPYRGLKDRTKDILTDESRGKARAAGVESAVLLELLPLAKAKIALVGPLATSPDIEKDGINVETGLREVFETVE--VVSTEYTELSEEDKVAVKAAVQNMDVVVLALGEKNEAQYQLAKFVQTLGKPVVITGRPLEVKEL-AESSDALLELWFPG-------T--EA----GRVTADLLSGASNPSGKLSMSFPQT------TGQIPVYYNH-LRTPQTPENKGERY--VSHYL------- | |||||||||||||
4 | 3tmgA | 0.14 | 0.12 | 4.17 | 0.61 | MUSTER | YVN--WGGETAATNVLKVVFEKMG-AEIFSIMYQYDGTVSSWVPTADKFYYEKLKTKFV-DLGANYEGTIQGFVVPSYVPI----SSISELKGKGDKFK---KMIGIDAG-----AGTQIVTEQALNYYGLYELVPSSESVMLASLDSSIKRNEWILVPLWKPHRYDIKFLDDPDLIMGGIESVHTLVRLENDDFDAYYVFDHFDDLILPLMDKNDKEPGK-EYRNAVEFVEKNKEIVKTWVP-----------------EKYKTLFD-- | |||||||||||||
5 | 3bc8A | 0.11 | 0.10 | 3.51 | 0.83 | CNFpred | ----------AGSSLLNKITNSLVLNVIKLAG-SVASCFVVPMATMSLTLCFLTLRHK-KYIIWPR-AGFEPVVIENVLEGDELRTDLKAVEAKIQELGPHILCLHSTTACFRVPDRLE-ELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGRIDAFVQSLD---MNFMVPVGGAIIAGFN-YPGRASASPSLDVLITLLSLGCSGYRKLLKERKE-----MFVYLSTQLKKLAENERLLQ-PISLAMTLKTIDGDKAVTQLGSMLFTR | |||||||||||||
6 | 2cveA | 0.12 | 0.03 | 1.04 | 0.34 | HHsearch-2 | RVGLAFLVPFAEVGRVYALLEA-RALKAEETYTPEGVRFALLLPKPEREGFLRALLDATGQVALE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 2rf1A | 0.12 | 0.11 | 3.93 | 0.61 | Neff-PPAS | ---VGWTDITATTATATTILEALGVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSTVRENLAGAKYTLATNAKGAELGI-KDFKDIAAHK--DELDGKIYGIEPGNDGNRL-IIDMVEKGTFDLKGFEVVESSEQGMLAQVARAEKSGDPIVFLGWEPANFKLTYLNYGGATVHTNVRAG-YTTECPNVDKLLQNLSFSLQMENEIMGKILNDGED-PEKAAAAWLKDNPQSIEPWLSG---VATKDG-------GDGLAAVKAA | |||||||||||||
8 | 4zo6A3 | 0.21 | 0.11 | 3.42 | 0.40 | HHsearch | --------------------------VLL--------------------------ENKSR---LLPLAKAKIALVGPLATSPDEEKDGINVETGLREVFETVE--VVSTEYTELSEEDKVAVKAAVQNMDVVVLALGEKNEAQYQLAKFVQTLGKPVVITGRPLEV--KELESSDALLELWFPG------T---EAGRVTADLLSG----AS---------------------------------------------------------- | |||||||||||||
9 | 3o63A | 0.16 | 0.11 | 3.59 | 0.51 | SP3 | ARLYLCTDARRERGDLAQFAEAAGGVIIQLRDKGSPGELRFGPLLAACEILADAAHRYGALFAVNDRAGADVLHLGQRD----LP------VNVARQILAPDTLIGRS------TH--DPDQVAAAAAGDADYFCVGPCWAPGLGLVRVAAELDKPWFAIGGINAQRLPAVAGARRIV--VVRAI--TSADDPRAAAEQLRSALTAA--------------------------------------------------------------- | |||||||||||||
10 | 1gkpa2 | 0.09 | 0.09 | 3.21 | 0.73 | PROSPECTOR2 | FIIYLPFMATFAKDTHETGSKAAGGTYI--------EMCCPSRNDDALEGYQLWKSKAEGN------SYCDYTFHMAVS---KFDEKTEGQLREIVADGISSFIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTACENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAETGATGYVVHLS-------CKPALDAAMAAKARDKTYAERGGVEAMKYIMSPPQKVLWDALAQGFDTEQKLLGKEAFTAIPNGIAIEDRVNLLYTYGVSR | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |