>PF04501 (252 residues) MALVPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNNHLIKRFKMS KMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSANNYQEVFNLNSMMQAEQLIFHL IYNNENAVNAICDNLKYTEGFTSNTQRVIHSVYSTTKSILDTTNPNTFCSRVSRDELRFF DVTNARARRGGAGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNCATCIIDETGLV ASVPDGVELYNP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MALVPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYHDDGWFICNNHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSANNYQEVFNLNSMMQAEQLIFHLIYNNENAVNAICDNLKYTEGFTSNTQRVIHSVYSTTKSILDTTNPNTFCSRVSRDELRFFDVTNARARRGGAGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNCATCIIDETGLVASVPDGVELYNP | |||||||||||||||||||
1 | 6djyB | 0.10 | 0.08 | 3.10 | 0.67 | SPARKS-K | FIPNTDGQFHSFRACSYAVKDIYRVVQN----GDELNESLLID-----TAIVWGLLGNTDSSYGNAATGTAN-----------VPTKVQPV---IPPDNFITPTIHLKTSIDAICSVEGILLLTIPGYEDELNKLRTGISQPKVTERQYRRARESIKNMLGSGDYNVAPLHFLLHTERRVLDNVVQPYVANLDPAEFENTPQLNMTRLQIALKMLTGDMDDIV-------------KGLILH-KRACAKFDV | |||||||||||||
2 | 1buyA | 0.12 | 0.08 | 2.64 | 0.57 | FFAS-3D | -----------------------------------------------ICDSRVLERYLLEAKEAEKITTGCAEHCSL------------NEKITVPDTKVNFYAWKRMEVGQQAVEVWQGLALLSEAVLRGQALLVKSSQPWEPLQLHVDKAVSGLRSLTTLLRALGAQKEAISPPD-AASAAPLRTITADTFRKLFRVYSNFLRGKLKLYT---------------------------------------- | |||||||||||||
3 | 1vddA | 0.16 | 0.07 | 2.25 | 0.37 | HHpred | -----------------------------------------------------------------------------------------------------RELSRLPGPKSAQRLAFHLFEQPREDIERLASALLEAIFNITDA------------------EKCDVCADPSRDQRTICVVEEPGDVIALERSGEYHVLPDHIKPLLPRV-G------QGMEVILATGTTVE------------------- | |||||||||||||
4 | 3uauA1 | 0.16 | 0.15 | 4.99 | 0.57 | MUSTER | NSIDEKTVKKYENQLNQTVKQEIASLSQDSGIKIEFSDFKCNADGDFI-------ACLSPNFKTLAKDNNDEYQELFQAKNISNEIYKGETNTSISIKEYYNDLFK-NQKSIQSNLVFEDFKLGEKVVSDINASLFQQD---PKISSFINKLSSDSYT-LSFDN---SINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG-----IKFNTQTLAMDEQAINELLNSDFSNTIQKYIILNN- | |||||||||||||
5 | 3jb6A | 0.09 | 0.05 | 1.97 | 0.53 | CNFpred | -----------------------------------------------PLRTYVKLLFHKG-----------DEFPFYESPS--------QDRIIFND-KSVASILPTFVYTCCQVGTAIMSGTHVESIVAMNHFLHCAKSYIDEKLKIKGIGRSWYQEALHNVCQATVPVWSEVIGHRTKSTSEPHFVFISLRAKRAELLYPEFNAYINRAI---------------------------------------- | |||||||||||||
6 | 2pffB | 0.15 | 0.14 | 4.81 | 0.89 | HHsearch-2 | MDAYSTRPLHGSL--EHVSFIASQLQEQ-FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQVLNHALAAKLLQEND----TTLVKTKENYIRPSNSNTDDYFEELRLYQTYHVGDSAETLSELIRTAENPSNTPDKIQLAHYVVTAKLLGF-TPGELRSYVAIAETDSWESFFVSV--RKAITVLFTSLPPSILSLNNEGVPSPMLSISNLTQEQVQ-DYVNKTNSHLPAGKQVEISLVNG | |||||||||||||
7 | 5xn7A1 | 0.12 | 0.10 | 3.66 | 0.75 | Neff-PPAS | ----ILLDNPQQKSIERFILANFDNFEQ--------------PDELFLVDNKVLSHHDGRTRILARKANVELSVTELLDAAHVSGKVRGESQQVIDALTEYHASTAEHADYELTSVEKLLNLRKQVEGYVLGHP----DSGRVQANALLNQVNSRLEAVSVLVVSEQSIKAHDKESKHLYLDGNANIDKLGGSDAVLEKVKAAVSHEYGQVVADTIFA---------GLSANDLAKDGKGIDIAGLNKVHQA | |||||||||||||
8 | 2kdpA | 0.17 | 0.03 | 1.05 | 0.45 | HHsearch | ---------SNAG-QLCCLRE----------DGERCGRAAGNARHLYICDYHKNLI----------QSVRN---RR--------------KRK-----G---S----------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 4r3aA | 0.08 | 0.08 | 2.96 | 0.68 | SP3 | FSLTIADISQDDEPLIYVMTGYSRSSVNCRFLQGEKTDPGAVER-----LAKAIRNCEEVEETIYNYRADGEGFWNHLLMGPLEDQDEKCRYFVGIQVD----MGQSERATELDRQLAEVQHRVKNHLAMIVSMIRIQSA--GGVGSQFDSLSRRVEALQLLYQESAINHIDGRGAIKVNVQADTVDVPVETAGRIGLLVSEVLTNALQHAFSDR----ASGVVQLR----SSVMSGELRVTVPEDCDWPNE | |||||||||||||
10 | 3kvnX1 | 0.08 | 0.07 | 2.84 | 0.82 | PROSPECTOR2 | HHHHLEAPSPYSAGQFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGNQLGIAPGDLAASTSPYRTDQIYDSITAANGSLIERDNTLLRSRDGYLVDRARQGLGADPNDFLQGRILNDVQAQQAAGRL----------VDSVQALQQAARYIVVWLLPDLGLTPATFGG-----------PLQPFASQLSGTFNAELTAQLSQA-GANVIPLNGLAADQNLIGTCFSGNGCTMNPTYGINGSTPD | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |