>PF04211 (267 residues) MSAGGSGGGASEAIPQNKLIAFGAAGGLIAIYLSYFMVQFAGPAFSFIGALGAICAIVWG SAAVRRVASYGLGTGVPSIGMLALGMGVVATMFGLAIGGIAGPIVAFVTAMVIGLVIGAL ANRVIGMGIPIMEQSMTEIAGAGTLAIVGLSTAMTGTFMFDVVLTEVIATGYIALIFIAG GMAILHPFNANLGPDEKQDRTLSTAFEKGAIAMIMAGIVSAVSAGASAAPTIVIGLAIWY VSFSQYRNYVVRDAYDVVGTGLLPKEE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | MSAGGSGGGASEAIPQNKLIAFGAAGGLIAIYLSYFMVQFAGPAFSFIGALGAICAIVWGSAAVRRVASYGLGTGVPSIGMLALGMGVVATMFGLAIGGIAGPIVAFVTAMVIGLVIGALANRVIGMGIPIMEQSMTEIAGAGTLAIVGLSTAMTGTFMFDVVLTEVIATGYIALIFIAGGMAILHPFNANLGPDEKQDRTLSTAFEKGAIAMIMAGIVSAVSAGASAAPTIVIGLAIWYVSFSQYRNYVVRDAYDVVGTGLLPKEE | |||||||||||||||||||
1 | 5oqtA | 0.11 | 0.11 | 3.93 | 1.09 | SPARKS-K | KESGAKGASLRKELGAFDLTMLGIGAIITGIFTGVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGLGWDLILEYGVASSAVAVGWSGYFQGLLAIIIVLFITFLLNLGAKKSARFNAVIVAIKVAVVLLFLAVGVWYVKPENWFSGVATGAATVFFAYIGFDAVSTAAEEVRNPQRDMPIGIIVSLLVCTLLYIAVSLVLTGIVPYEQGFISLGAIAGITTVLLVMMYGQTRLFYAISRDGLLPKVF | |||||||||||||
2 | 5z1fA | 0.10 | 0.09 | 3.43 | 1.08 | FFAS-3D | ----------------RQYFIYFFVAVTILFYIAFVSAITRTVLESFLPQIALIVFLAMLPKLLLFLSKA---EGIPSQSHAIRAASIGVTLAGTLLATSLPKSATFFLTYVALKFFIGYGLELSRIIPLIIFHLKKKYRVPGDMLILTITFCYSVIAPLILIFGIT----YFGLGWLVLRNQALKVYVPSYESYGRMWPHIHQRILAALFQVVMFGYLGAKTFFYTALVIPLIITSLIFGYVCRQLEVACRELKEEIFRAYIPH-- | |||||||||||||
3 | 3rkoC | 0.07 | 0.06 | 2.62 | 1.25 | CNFpred | ----------------LSLLMVVLTGLLGVLAVLCSWKEIQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGRITAATKFFIYTQASGLVMLIAILALVFVHYTFNYEELLNTPMSGVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNA-TDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRD--------- | |||||||||||||
4 | 5cwqA | 0.13 | 0.11 | 3.91 | 1.04 | PROSPECTOR2 | --------------EELERESEEAERRLQEARKRSEEARERGDLKELAEALIEEARAV--QELARVACERGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCR----------GNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQECRGG--------WLEHHH | |||||||||||||
5 | 4tq3A | 0.09 | 0.08 | 3.13 | 1.06 | SPARKS-K | --------SKYLRLLRPVAWLCFLLPYAVGFGFGITPNASLQHAVLGLLSFAFWMAFSFTINALYNLSMQPLVTGEISV-REAWLYCIAFLALSLATAAAINEKFFLAMLGANIIGYVYSAPPRFKAWPVM---DVICNALAAVLAFYAGLSIGGAEVPI--AIYPAAFFLAATFYIPTAVTPVFFG----------PERALKSLYPLSAITVILWAYVFLMAERIEIKVISPLIIAYTLIYTFIINSLILTPFGIISALFIAYGFA | |||||||||||||
6 | 5oqtA | 0.14 | 0.13 | 4.61 | 1.04 | FFAS-3D | ---GAKGASLRKELGAFDLTMLG-IGAIIGIFVGVAAAEHAGPALVLSFILSGLACVFAALCYAEFASTVPVSGSAYTYSYATFGIAWILGWDLILEYGVASSAVAVGWSGLPAIIIVLFITFLLNLGAKKSARFNAVIVAIKVAVVLLFLAVGVWYVKPENWTFSGVATGAATVFFAYIGFDAV---STAAEEVRNPQRDMPIGIIVSLLVCTLLYIAVSLVQDWVAGFISLGAIAGITTVLLVMMYGQTRLFYAISRDGLLPK-- | |||||||||||||
7 | 3zuxA | 0.13 | 0.11 | 3.88 | 0.28 | HHpred | --------LKPSDFDHPKVVIIGVIAQATAWCLSKLL---NLP-AEIAVGVILVGC-CPGGTASNVMTYL--ARGNVA---LSVAVTSVSTLTSPLLTPLEIQAMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAV--VGAS--KGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVQNSGLAAALAA-AHFAAAPVVAVPGALFSVWISGSLLATYWAAK----------------- | |||||||||||||
8 | 4ikvA2 | 0.11 | 0.10 | 3.51 | 0.92 | MUSTER | --------------TVETFISLVGILGIIIPIIYFVVMYRSPKTTAEERSRVIAYIPLFVASAMFWAIQEQGSTILANYADKRTQLDVAGIHLSPAWFQSLNPLFIIILAPVFAWMWVKLGKRQPTI-PQKFALGLLFAGLSFIVILVPGHLSGGGLVHPIWLVLSYFIVVLGELCLSPVGLSAT----TKLAPAAFSAQTMSLWFLSNAAAQAINAQLVRFYTPTAYFGTIGGAALVLGLILLAIAPRIGRLMK------------ | |||||||||||||
9 | 3rkoB | 0.15 | 0.13 | 4.30 | 1.24 | CNFpred | ----------------TMLSVVTGVGFLIHMYASWYMR-GYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIG-RVGDVFLAFALFILLNFREMV-MLMWATLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGV--YLIARTHGLFLMTVLHLVGIVGAVTLLLAGFAALVQ-----TDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACH------------ | |||||||||||||
10 | 1nekD | 0.13 | 0.05 | 1.70 | 0.53 | HHsearch-2 | -------------------------------------------------------------------------------------------------------------------------SNASALGRNGVHDFILVRATAIVLTLYIIYFATSGELTYEVWIGFF-ASAFTVFTLLALFSILIHAWIGDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |