>PF03761 (268 residues) VIVIFFALTGCIGCDFYKLTADENKDRASTCGKEVLERKGNETTPANVSQTDWTLKMHNI DHNPDRYYLATMISTRHVLTSARLVRNESGWRDGSRDECDGKNLVVPPSLLEKVEIPQHA QDGSKSVSNSTRCKITAAYILDGCASSYPMLTAGPLIATIDYSSQSNISVPCLAQEENLM NVSEIGDLYFIDDSYKLKHSKTTINHTYSLFYKTSIPTVFKSRHDYGILTNVVDNKMTVM AFAASDDQNTFYTMSFLYKSLCEPTGIC |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | VIVIFFALTGCIGCDFYKLTADENKDRASTCGKEVLERKGNETTPANVSQTDWTLKMHNIDHNPDRYYLATMISTRHVLTSARLVRNESGWRDGSRDECDGKNLVVPPSLLEKVEIPQHAQDGSKSVSNSTRCKITAAYILDGCASSYPMLTAGPLIATIDYSSQSNISVPCLAQEENLMNVSEIGDLYFIDDSYKLKHSKTTINHTYSLFYKTSIPTVFKSRHDYGILTNVVDNKMTVMAFAASDDQNTFYTMSFLYKSLCEPTGIC | |||||||||||||||||||
1 | 4igdA2 | 0.12 | 0.10 | 3.46 | 2.42 | SPARKS-K | ------------------------------CGL-PKFSRKLNGRPAQKGTTPWIAMLSHLN--GQPFCGGSLLGSSWIVTAAHCLHQ----SLDPEDPTLRDSDLLSPS---DFKIILGKHWRLRSDENEQHLGVKHTTLHPQYD--PNTFENDVALVELLESPVLFVMPICLP--EGPQQEGAMVIVSGWRFPETLMEIEIPIVCQKPLKKKVTRDMICAGAGDGGPMVTLNRGQWYLVGTVSWGRYGVYSYIHHNKDWIQRVTGVR | |||||||||||||
2 | 1cgiE | 0.12 | 0.09 | 3.30 | 2.11 | FFAS-3D | ------------------------------CGVPAIQSRIVNGEEAVPGSWPWQVSLQ--DKTGFHFCGGSLINENWVVTAAHCGVTTSD------------------------VVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRRLQQASLPLLSKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSPGVYARVTALVNWVQQTL--- | |||||||||||||
3 | 2f83A | 0.10 | 0.08 | 2.93 | 3.92 | HHpred | -----------------------LCKMDNECTTK-IKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVES--------------------PKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAE--SGYDIALLKLETTVNYSQRPICLPSKGDRNVIYTDCWVTWGKIQNTLQKAKIPLECQKRYHKITH-KMICA-KGDGGPLSCKHNEVWHLVGITSWGEPGVYTNVVEYVDWILEKT--- | |||||||||||||
4 | 2olgA | 0.09 | 0.08 | 3.12 | 2.21 | MUSTER | -------------------RNRRPELLPNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTATDPDCYG------AVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFYIRPVCLPQPNEEVQVGQRLTVVGGQYSTIKQKLAVPVVRVRSSQLCAGGEKASCGGDSGGPLLAERNQQFFLEGLVSFGAPGIYTKVGKYRDWIEGNIRP- | |||||||||||||
5 | 1eawA | 0.11 | 0.08 | 2.99 | 3.43 | CNFpred | ---------------------------------------VVGGTDADEGEWPWQVSLHALG--QGHICGASLISPNWLVSAAHCYIDDRGFRYSD---------------PTQWTAFLGLHDQQRSAPGVQERRLKRIISHPFFND--FTFDYDIALLELEKPAEYMVRPICLPDASHVFPAGKAIWVTGWGGALILQKGEIRVINTPRMMCVGFGVDSCQGD-SGGPLSSVEAGRIFQAGVVSWGKPGVYTRLPLFRDWIKENTGV- | |||||||||||||
6 | 2f83A | 0.10 | 0.09 | 3.21 | 0.88 | HHsearch-2 | CQFFTYTPAQA-SCNPTKILHGRLCKMDNECTTK-IKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVES--------------------PKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAE--SGYDIALLKLETTVNYSQRPICLPSKGDRNVIYTDCWVTWGKIQNTLQKAKIPLECQKRYHKITH-KMICA-KGDGGPLSCKHNEVWHLVGITSWGEPGVYTNVVEYVDWILEKT--- | |||||||||||||
7 | 2olgA | 0.09 | 0.08 | 3.12 | 2.75 | Neff-PPAS | --------------------NRRPELLPNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNQFACGGSLINNRYIVTAAHCVAG-----RVLRVVGALNKVRLGEWNTATDPDCY-GAVRVCVPDKPIDLGIEETIQHPDYVDGDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGYSTIKQKLAVPVVHAEQCAKTFGAAKDSCGGDSGGPLLAERNQQFFLEGLVSFGAPGIYTKVGKYRDWIEGNIRP- | |||||||||||||
8 | 2f83A | 0.11 | 0.10 | 3.51 | 1.42 | HHsearch | CQ--FFTYTPAASCSPTKILHGRLCKMDNECTTK-IKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVES--------------------PKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAE--SGYDIALLKLETTVNYSQRPICLPSKGDRNVIYTDCWVTWGKIQNTLQKAKIPLECQKRYRKITH-KMICA-KGDGGPLSCKHNEVWHLVGITSWGEPGVYTNVVEYVDWILEKT--- | |||||||||||||
9 | 6esoA2 | 0.10 | 0.08 | 3.00 | 2.49 | PROSPECTOR2 | V------------------------------------CTIVGGTNSSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDV--------------------WRIYSGILNLSDITKDTPFSQIKEIIIHQNYKVSEG--NHDIALIKLQAPLNYFQKPICLPSKGDTSTIYTNCWVTGGEIQNILQKVNIPLVCQKRYQDYKTQRMVCAGGKDGGPLVCKHNGMWRLVGITSWGQPGVYTKVAEYMDWILEKTQSS | |||||||||||||
10 | 4hzhB | 0.15 | 0.12 | 4.00 | 3.13 | SAM | -----------------------------DCGLRPLDGRIVEGSDAEIGMSPWQVMLFRKS-PQELLCGASLISDRWVLTAAHCLLYPTE---------------------NDLLVRIGKHSRTRYENIEKISMLEKIYIHPRYNWEN--LDRDIALMKLKKPVAFYIHPVCLPDRETALQAGYKGRVTWG--PSVLQVVNLPIVCKDSTRRITD-NMFCAGEGDGGPFVMKSNNRWYQMGIVSWGEYGFYTHVFRLKKWIQKVI--- | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |