>PF03708 (246 residues) LNVSMWDEPHELQLLGSQSLPNITNIAQISGITGGCVGFRPQGVPWYLGWSRQEATRFLL RHPSFSKSTEPFTVVTADRHNLFMGSEYCGAYGYRFWNMYNCSQVGRQYRCGNARSPRPG LPEIQCTRRGGKWVNQSQEINESEPFSFTVNCTASSLGNASGCCGKAGTILPGKWVDSTQ GSFTKPKALPPAIFLICGDRAWQGIPSRPVGGPCYLGKLTMLAPKHTDILKVLVNSSRTG IRRKRS |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LNVSMWDEPHELQLLGSQSLPNITNIAQISGITGGCVGFRPQGVPWYLGWSRQEATRFLLRHPSFSKSTEPFTVVTADRHNLFMGSEYCGAYGYRFWNMYNCSQVGRQYRCGNARSPRPGLPEIQCTRRGGKWVNQSQEINESEPFSFTVNCTASSLGNASGCCGKAGTILPGKWVDSTQGSFTKPKALPPAIFLICGDRAWQGIPSRPVGGPCYLGKLTMLAPKHTDILKVLVNSSRTGIRRKRS | |||||||||||||||||||
1 | 6f1tg | 0.09 | 0.09 | 3.39 | 0.70 | SPARKS-K | LNRQFFDE----RWSKHRVVSCLDWSSQYPELLVASYNNNEDAPHEPDGWNMKYKKT---TPEYVFHCQSAVMSATFAKNLVVGGTYSGQINRSNKRTPQRTPLSATHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSMSFPVGDVNNYTACRHGSKGHQGPAVDFSHLFVTSSFKLWNNKPAGYVYDVMWSHPALFACVDGMGRLDLWNLNNDTEVPTASI | |||||||||||||
2 | 3cbhA2 | 0.13 | 0.09 | 2.95 | 0.40 | FFAS-3D | --------------------------------------YLDAGHAGWLGWPAAQLFANVYKNASSPRALRGLATNVANYNGWNITSPPSYTQGNAVYNLANHGWSNAFFITDQGRSGKQPTG----QQQWGDWCNVIRPSANTGDSLLDSFVWVKPGGECDGTSDSSAPRFDSH----------------------CALP--DALQPAPQAGAWFQAYFVQLLTN--------------------- | |||||||||||||
3 | 3ofgA | 0.20 | 0.06 | 1.82 | 0.30 | HHpred | -GVVDPDIRPFTEKWTQSQLYNNHVDLQVFVIDDNRAIF--FK----NGEQAFEAKKFLLKQEF--------------VSEVTIEGQFDG------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
4 | 1kanA | 0.11 | 0.09 | 3.41 | 0.64 | MUSTER | MNGPIIMTREERMKIVHEIKERILDK-YGDDVKA--IGVY--GSLG-RQTDGPY---MCVMSTEEAEFSHEWNFYSEELDYASQVESDWPLTHGQFFSIYKVYQTAKSVEAQKFHDAICALIVEELFEYAGKWRNIRVQGPTTFLPSL--------TVQVAMAGAMLIGLHHRICYTTSASVLTEAVKQSPSGYLC--QFVMSGQLSDSEKLLESLENF---------WNGIQEWTERHGYIVDVS | |||||||||||||
5 | 6d5iA | 0.17 | 0.04 | 1.20 | 0.47 | CNFpred | ----------------------------------IVMNGAK----------------CTNPQWKEQGLSENFVAFNLTRMQLIGGTWYGGEMKKGMFSMMNYL----------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 2pffB | 0.18 | 0.16 | 5.18 | 0.63 | HHsearch-2 | SNSALFRAVQLVAIFGGQGNTDD--YFEEYVLVGDLIKFSASNTPDYLLSIPIQLAHKLLFTPYKGATGHSQGLVTISWESFFVSVRKAITIGVRYEAYPNTSLPPSILEDEGVPSPMVSGPPNLTLRKAKA-PSGLD--QSRIPFSRKLKFSNRFLPVASPFHSHLLNKDLVKNNVSF-----NAKDIQ--------------IPVYDTFDGSDLRVLSSISERIVDCIIRLPVKWETTTQFKAT | |||||||||||||
7 | 1kanA | 0.10 | 0.09 | 3.47 | 0.98 | Neff-PPAS | MNGPIIMTREERMKIVHEIKERILDKYGDDVKAYGSLGRQTTEEAEFSHEWTTGEWKVEVNFYSEEILLDYASQVESDWPLTHGQFFSILPIYDSGGYLEKVYQTAKSVEAQKFHDAICALIVEELFEYAGKWRNIRVQGPTTFLPSL--------TVQVAMAGAMLIGLHHRICYTTSASVLTEAVKQSPSGYDHLCQFVMSGQLSDSEKLLESLENFW------NGIQEWTERHGYIVDVSKRI | |||||||||||||
8 | 3j20G | 0.27 | 0.09 | 2.75 | 0.41 | HHsearch | --------------------------------------------------------------------------------------------------------------------------------------MATFKLVISDPKSKQVEITGAETEKLI---GKRI----GDQIPA---KELFGKEFPEDKLEIRGGTDKDGFPMRPSKGPGFRP-------------------KEKGERRKK- | |||||||||||||
9 | 6fmlG | 0.08 | 0.08 | 3.08 | 0.61 | SP3 | FFCGHFAETGSFLREGTNVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIE-VVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALL | |||||||||||||
10 | 4uxeA | 0.11 | 0.11 | 3.96 | 0.89 | PROSPECTOR2 | PSQTNLSAPLVSSSTGEFGGSLAANRTFTIRNTGAPTSIVFEKGPASGANPAQSSIRVWGNQFGGGSDTTRSTVFEDTSHHFYSQRNKDGNIAFNINGTVPININASGLNVNGTATFGRSVTANGEFISKSLTAAGDQTGGFNGLRPLLINNQSGQVTINSGGLTVNSRIRSQGTKTSDLYTRAPTSDTVGFWSIDINDSAYNQFPNEVTGLPYLERGEEVKSPLDSLYQDWITYPTTPEARTTRV | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |