>PF03619 (273 residues) GIAGAFVWVALFLTCQQIYQHLRWYTNPQEQRWIVRILFIVPIYATYSWISLLFFNSESV YVYFFTVRDCYEAFVIYNFLSLCYEYLGGEGNIMSEIRGKPIKSSCLYGTCCLSGKTYTI GFLRFCKQATLQFCLVKPLMAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALY GLYLFYFATKDLLTPFEPVLKFCTIKSVIFLSFWQGVGLAILEKAEVISPIVDSDGATTS AGTVSAGYQNFFICIEMLFAAVALRYAFPYQVY |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | GIAGAFVWVALFLTCQQIYQHLRWYTNPQEQRWIVRILFIVPIYATYSWISLLFFNSESVYVYFFTVRDCYEAFVIYNFLSLCYEYLGGEGNIMSEIRGKPIKSSCLYGTCCLSGKTYTIGFLRFCKQATLQFCLVKPLMAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALYGLYLFYFATKDLLTPFEPVLKFCTIKSVIFLSFWQGVGLAILEKAEVISPIVDSDGATTSAGTVSAGYQNFFICIEMLFAAVALRYAFPYQVY | |||||||||||||||||||
1 | 3ayfA2 | 0.10 | 0.09 | 3.23 | 1.06 | SPARKS-K | RIWQIILVVGMLLWLFIVFRGVKRGGG------LIHLLFYSAIAVPFFYIFAFFIQPDTNFTMADFWRWWIIHLWVEGIFEVF--AVVVIGFLLVQL------------------RLVTKKSTVRALYFQFTILLGSGV------IGIGHHYYYNG-SPEVWIALGAVFSALEVIPLTLLILEAYEQYKMMRDGGFPYKATFWFLISTAIWNLVFGFLINLPAVSYFEHGQ------FLTPAHGHAAMMGVYGMFAIAVLLYSLRNIVKPEAW | |||||||||||||
2 | 5ztkA | 0.06 | 0.05 | 2.07 | 1.18 | FFAS-3D | -IDHLLTMGVGVHFAALIFFLVVSQFVAPKYRIATALSCIVMVSAGLILNSQAVMQDLTFSNGYRYVNWMATIPCLLLQLLIVLNL------------------------------------KGKELFSTATWLILAAWGMIITGYVGQLYE-----VDDIAQLMIWGAVSTAFFVVMNWIVGTKIFKNRATMLG-GTDSTITKVFWLMMFAWTLYPIAYLVPAFM----------NNADGVVLRQLLFTIADISSKVIYGLMITYI------ | |||||||||||||
3 | 3rkoC | 0.09 | 0.08 | 3.19 | 1.27 | CNFpred | GLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFF-VPMYFLIALWGRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVHGWLPDAHSQA---------PTAGSVDLAGILLKTAAYGLLRFSLFPNASAEFAPIAMWLGVI-DIKRLIAYTSVSHMGFVLIAIYT------------GSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIH | |||||||||||||
4 | 5t1aA1 | 0.08 | 0.08 | 3.02 | 1.10 | Neff-PPAS | PLYSLVFIFGFVGNMLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLYHIGYFGGIFFIILLTIDRYLAIVHAVFALKAR-----------TVTFGVVTSVITWLVAVFASVPGIIFTKQKEDSVYVCGPYFPRGWNNFHTIMRNILGLVLPLLIMVICYSGISRASREKKAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFG----LSNCESTSQLDQATQVTETLGMTHCCINPIIYAFVGEKF | |||||||||||||
5 | 5xjjA | 0.08 | 0.08 | 3.27 | 0.99 | SPARKS-K | ALATSFTNVTLVGALETLCGQAYGAKQYEKIGTYTYSAIASNIPICFIISIIWFYDPDISRIAGSYAFWLIPVLFAQAIVIPLTRFLLGLVLPLLYTAVLGSNGPAMCEKTRGFVSEDFVSCVKQFFQYGVPSAAMICLEWWLFELLILCSGLLSNPKLETSVLSICLTTETLHYVISSGVAAAVSTRVSNNLGAGNPQVARVSVLAGLCLWLVESAFFSILLFTF--RNIIFSNSKEVVDYVADLSPLLCLSFILDGFTAVLNGVARGSGWQ | |||||||||||||
6 | 5b2nA | 0.06 | 0.05 | 2.07 | 1.17 | FFAS-3D | -IDHLLTMGVGVHFAALIFFLVVSQFVAPKYRIATALSCIVMVSAGLILNSQAVMQDLTFSNGYRYVNWMATIPCLLLQLLIVLNL------------------------------------KGKELFSTATWLILAAWGMIITGYVGQLYE-----VDDIAQLMIWGAVSTAFFVVMNWIVGTKIFKNRATMLG-GTDSTITKVFWLMMFAWTLYPIAYLVPAFM----------NNADGVVLRQLLFTIADISSKVIYGLMITYI------ | |||||||||||||
7 | 2pffB | 0.11 | 0.09 | 3.16 | 0.31 | HHpred | -------------VLNLCLTEFENCYLNDIAKLLQTLVKTK--ELIKNYITIMAKRPGNTDDYFEELRDLYQTYHVLV-GDLIK-FS--AETLSELIRTKVFTQGLNILEWLNPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAELRS---YLKGATGH--SQGLVTAVAFVSVRKAITVLFFIGVRCYEAYPNT---------------SLPPSILEDSLENNEGVPSMLSI--SNLTQQDYVNKTNSHLPAGKQ---------------- | |||||||||||||
8 | 5t77A | 0.10 | 0.09 | 3.41 | 0.92 | MUSTER | LIILALVILSYFFPELIINLFGAGSSKILAKKLLLITSPSIYFIFLWAISYSIL-NKFFWPALTPSISNITIIIGTFLSTKYGIISPTGSILMFFSIIKSIIKHKYYF------TIKHFPHFLKLFFPTFMTMVVSQINTVVDMNVVSFYDKGSISYLQY-ASRFYLLPYGLFAVSVSTVVLSKISNDRKNFN-----YHLNDALKTTLFFTIPSMVGLIFLSTP-IIRFFYEHGA--FTSKDTLITSKILIAYTLGLPFYGIYSTISRS--H | |||||||||||||
9 | 4he8G | 0.10 | 0.09 | 3.39 | 1.27 | CNFpred | GLDGLSALFFLTIALTVFLGALVARVERFLGLALLMEGLLLGLFAARDLLVFYVFFEAALIPALLMLYLYGRTRALYTFVLFTLVGSLPMLAAVLGARLLSGSPTFLLEDLLAHPLQAAFWVFLGFALAFAIKTPLFPLHAWLPPFHQEN--------HPSGLADALGTLYKVGVFAFFRFAIPLAPEGFAQAQ-LAALSALY-FKTLLAYAGLSHMGVAALGVFS------------GTPEGAMGGLYLLAASGVYTGGLFLLAGRLYERTG | |||||||||||||
10 | 1vt4I | 0.15 | 0.14 | 4.71 | 0.70 | HHsearch-2 | AVSGTLRLFWTLLSKQEEMPIKTEQRQPIEQRDRLYNDNRLQPYLKLR-QALLELRPKTW-VALDVCLNSPETVLEMLLYQIDPNWTSRSDELRRLLKSKPYEKNAFNLSCKITRMTLTPDE---VKSLLLKYLDCRPQDLRLSIIAESIR-DGLAT--WD---NWKHVCDKL-TTIIESSLNVLYRKMFDRLSVFPPSAHIPTILLSIWFDSDVMVVVNKLHKYSLVEKQPKESTISIPSIYKVKHIGHHLKNIEHPERMTLFRMVFLDFRF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |