>PF03613 (269 residues) KLTKKDLISVFLRSNFHQGSWNFERMQAIGYAYAMNPVLKKLYTTKEEQKDALKRHLEFF NTQPFVTSPILGVTCAMEEQRANGADIDNGAINGVKVGLMGPLAGVGDPIFWGTLRPVLA ALGASIATGGSLLGPILFFVLWNVVRLGFRWITQFYGYQVGANIVKDLAGNKLQKLTEGA SILGLFIMGALVARWTSIKVPFELSRVTNAAGEVTVTTVQSVLDSLLPGLLALGLTFLCM RLLKKKVSPIWLIFGLFAVGIIGYWIGLL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | KLTKKDLISVFLRSNFHQGSWNFERMQAIGYAYAMNPVLKKLYTTKEEQKDALKRHLEFFNTQPFVTSPILGVTCAMEEQRANGADIDNGAINGVKVGLMGPLAGVGDPIFWGTLRPVLAALGASIATGGSLLGPILFFVLWNVVRLGFRWITQFYGYQVGANIVKDLAGNKLQKLTEGASILGLFIMGALVARWTSIKVPFELSRVTNAAGEVTVTTVQSVLDSLLPGLLALGLTFLCMRLLKKKVSPIWLIFGLFAVGIIGYWIGLL | |||||||||||||||||||
1 | 5xjjA | 0.10 | 0.10 | 3.56 | 1.03 | SPARKS-K | GHNGELQLSGVALATSFTNVTGFSIMYGLVGALETLCGQAYGAKQYEKIGTYTYSAIASNIPICFIISIIWFYI----ENILISLGQDPDISRIAGSYAFWLI--------PVLFAQAIVIPLTRFLLQGLVLPLLYTAVTTLLFHVFVCWVFVLMATSVSFWFYAVILSCYVRFCVKQFFQYGVPSAAMICLEWWLFELLILCSGLLSNP-KLETLTTETLHYVISSGVAAAVSTRVSNNLGAGNPQGLCLWLVESAFFSILLFTFRN | |||||||||||||
2 | 4av3A | 0.11 | 0.10 | 3.78 | 1.07 | CNFpred | ---TERMKEISSYIRSGADSFLAHETKAIFVAIVIAILLMIFT--TWQTGVAFLLGAVMSASAGIVGMKMARANVRVAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIF-VPFAMTVSGYALGCSIIAMFDRVGGGVYTKAADMAAATIADNVGDNVGDVAGLGADLLESFVGAIVSSIILASYMFPI-YVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILYVIVKDNPQRELNISLWTSALLTVVLTA | |||||||||||||
3 | 5y50A | 0.12 | 0.11 | 3.94 | 1.03 | SPARKS-K | HLGELFLSSTAIAVSFCSVTG---FSVVFGLASALETLCGQANGAK-QYEKLGVHTYTGIVSLFLVCIPLSLLWTYI-GDILSLIGQDAMVAQEAGKFATWL-------IPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLCWSLVFVSYWLNVTVLGLYMTFGMGEFFRFGIPSASMICLEWWSFEFLVLLSGIL-------PNPKLLSTQSSLYQIPESLGAAASTRVANELGAGRMAVYTAMVITGVESIMVGAIVFG | |||||||||||||
4 | 3m1iC1 | 0.09 | 0.07 | 2.69 | 0.96 | FFAS-3D | -------------------------------IALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQIL-----QFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDD--EVFKTQKNLINKSDLTLVQILKQEWPQEFIPELIGSSSSS------VNVCENNMIVLKLLSEEVFDFS--------AEQMTQAKALHLKNSMSKEFEQIFKL-----CFQVLEQGSSSSLIVATLESLLRYLHWIPY- | |||||||||||||
5 | 3feyA2 | 0.15 | 0.09 | 2.90 | 0.32 | HHpred | --FNPLKIEVFVQTLLHLAAKSFSHSFS--ALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQ-------IVDCAAVAN--WIFSSELRDFTRLFVWEILHSTIRKMNK-------------------------HVLKIQKELEELEEQIERLQ-EKVESAQSEQKNLFLVIFQRFIMILTE------------------------------------------------------------------------ | |||||||||||||
6 | 4apsA1 | 0.12 | 0.11 | 3.91 | 0.82 | MUSTER | --QPLGLSTLFMTEMWERFS--YYGMRAILLYYMWFLISTGDLHTRATAASIMAIYASMV----YLSGTIGGFVADRI------------ARPAVFWGGVL-VLALPFGASALFGSIILIIIGTGFLKP-NVSTLVGTLYRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---YHVAFSLAAIGMFIGLLVYYFGGKKTLD-PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVG-WNSLPAYINLLTIVAIAIPVFYFA | |||||||||||||
7 | 5y50A | 0.11 | 0.10 | 3.75 | 1.05 | CNFpred | HLGELFLSSTAIAVSFCSVTG---FSVVFGLASALETLCGQANGQYEKLGVHTYTGIVSL----FLVCIPLSLLWTYIGDILSLIGQDAMVAQEAGKFATW-------LIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCI-SLGAAIAIGVSYWLNVTVLGLYM-EGMGEFFRFGIPSASMICLEWWSFEFLVLLSGILPNPKLEASVSVCLSTQSSLYQIPESLGAAASTRVANELGAGNKQARMAVYTAMVITGVESIMVGA | |||||||||||||
8 | 2vv5A | 0.13 | 0.05 | 1.79 | 0.37 | HHsearch-2 | -----------------------------------------------------------------------------------------------------------------------------LSYAVNIVALAIIIVGLIIARMISNA-V-NRLMIS--R---KID-ATVADFLSALVRYGIIAFTLIAALGR-VGVQ--------------T---ASVI-------AVLGAAGLVVLALQG--SLSNLA-----AGVLLVMFRPF | |||||||||||||
9 | 5ezmA1 | 0.08 | 0.08 | 3.07 | 0.94 | Neff-PPAS | -LVGPDEGRYAEISREMFASGDKYFEKPPFHMWVTVVGYELFGLG--------EWQARLAVALSGLLGIGVSMMAARRWFGARAAAFTGLALLAAPMWSVAAHFNTLDMTLAGVMSCVLAFMLMGQHPDAWMVACWAAMGVAILTKGLVGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRNPEFPNFFFIHEHWQRRSGSVFYFLPLVIGGFLPWAGIFPKLWTAMRARFRPALMAGIWAIAIFVFFSISRS | |||||||||||||
10 | 4dgkA1 | 0.16 | 0.04 | 1.48 | 0.39 | HHsearch | QFNPRDGYRQFLDYSMLRAAPQLAK---LQAWRSVYSKVASYIED-EHLRQAFSFHSLLVGGNP--TSSIYTLIHALEREW-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |