>PF03553 (283 residues) SFGLKAPYVTLPVGFGLIFHNTIRDQMIQNGINIETSMVWKSMWIAGLAMLVGLLIAVLI AYRKPREYEDIKVEGFSLDEDVQMTGKQWLALVAAAVAFVVQLKTKSLPLGALSGLIAMV ATGSVKWNEIDEMIEGGLKMMALVAIVMLVAAGYGNVLRETGAVEALVRSATAVITTKLT GAIIMLLIGLLVTMGIGTSFGTVPILAAIYCPLGLELGFSVPAIILLIGIAAALGDAGSP ASDTTLGPTSGLNIDGQHEHIWDTCVPTFIFYDITLIIFGVIG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | SFGLKAPYVTLPVGFGLIFHNTIRDQMIQNGINIETSMVWKSMWIAGLAMLVGLLIAVLIAYRKPREYEDIKVEGFSLDEDVQMTGKQWLALVAAAVAFVVQLKTKSLPLGALSGLIAMVATGSVKWNEIDEMIEGGLKMMALVAIVMLVAAGYGNVLRETGAVEALVRSATAVITTKLTGAIIMLLIGLLVTMGIGTSFGTVPILAAIYCPLGLELGFSVPAIILLIGIAAALGDAGSPASDTTLGPTSGLNIDGQHEHIWDTCVPTFIFYDITLIIFGVIG | |||||||||||||||||||
1 | 4r0cA | 0.13 | 0.13 | 4.43 | 1.87 | SPARKS-K | QLAGRPPIAGIATAFAAVSGGFSPVDATLAGLSTEAAHIATGNYWFIIASTFLVTGLVTLITRTLPRLAHADASVDAPQIHSRAMKWTGLTLAILLAGLALLVLVIVALIAGICGAVYGRVSGQFNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLVPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFART-GIGTLIALMLPYSLTLLLGWSVLLGVWI | |||||||||||||
2 | 4r0cA | 0.13 | 0.13 | 4.50 | 2.01 | FFAS-3D | --------VLIPLPVDATLAGLSTEAAHIIDPDRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASVDAMKWTGLTLAILLAGLALLVLLVVIVALIAGICGAVYGRVSGQFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLVPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFARRGTLIALMLPYSLTLLLGWSVLLGVWIGFG | |||||||||||||
3 | 4r0cA | 0.13 | 0.13 | 4.40 | 1.01 | HHpred | --GIATAFAAVSGGFSAATLAGLSTEAAHPDRTVA---ATGNYWFIIASTFLVTGLVTLITRTRLAHANTVADASV--DAPQIHSRAMKWTGLTLAILLAGLALLGSPFIHGLVVIVYGRVSGQRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLTPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVGFARRYQGIGTLIA-LMLPYSLTLLLGWSVLLGV- | |||||||||||||
4 | 4r0cA | 0.13 | 0.13 | 4.63 | 1.08 | MUSTER | LAGRPPIAGIATAFAAVSGGFSAPVDATLAGLSTEAAHIITGNYWFIIASTFLVTGLVTLITRTEPRLAHANTVADASVDAPQILTLAILLAGLALLPFIHGLVVIVALIAGICGAVYGRVSGQFNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLVPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFARETGIGTLIALMLPYSLTLLLGWSVLLGVWI | |||||||||||||
5 | 4r0cA | 0.15 | 0.14 | 4.90 | 1.43 | CNFpred | SGGFSANLLVGPVDATLAGLSTEAAHIIDPDRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPR-VADASVDAPQIHSRAMKWTGLTLAILLAGLALLVL-LVVIVALIAGICGAVYGRVSGFRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWL-PKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFARETGIGTLIALMLPYSLTLLLGWSVLLGVWI | |||||||||||||
6 | 4r0cA | 0.12 | 0.12 | 4.22 | 2.91 | HHsearch-2 | LAGRPPIAGIAAFVSGGFLAGLSTEHIIDPDRTVA----ATGNYWFIIASTFLVTGLVTLITRTLTEPRAANTVASAPQIHSRAMKWTGLTLAILLAGLALLVNHGLVLIAGICGAVYGRVSGQRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLPKVVL-LLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFAR-R-YQPEIA-LMLPYSLTLLLGWSVLLGFG | |||||||||||||
7 | 4r0cA | 0.12 | 0.12 | 4.24 | 1.59 | Neff-PPAS | --FSANLLVGPVDATLAGLSTEAAHIIDPDRTVAATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTVADASDAPQIHSRAMKWTGLTLAILLAGLALLVLPIVALIAGICGAVYGRVSGQFNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLGPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFARIGTLIALMLPYSLTLLLGWSVLLGVWIGFG | |||||||||||||
8 | 4r0cA | 0.12 | 0.11 | 4.02 | 4.14 | HHsearch | LAGRPPIAGITAFVSGGFSAGLSTEAAHDPDRTVA----ATGNYWFIIASTFLVTGLVTLITRTLTEPRLANTVASVPQIHSRAMKWTGLTLAILLAGLALLVNHGLVLIAGICGAVYGRVSGQRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLPKVVLL-LLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFAR-R-YQPEIA-LMLPYSLTLLLGWSVLLGV- | |||||||||||||
9 | 4r0cA | 0.13 | 0.13 | 4.53 | 1.71 | PROSPECTOR2 | DVTATHPLVLIPLAGTAFAAVSGGFSANLLVGPVDATLAGLSTEAFIIASTFLVTGLVTLITRLAHANTVADASVDAPQIHSRAMKWTGLTLAILLAGLALLLVVIVALIAGICGAVYGRVSGQFNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAALTVPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFAPETGIGTLIALMLPYSLTLLLGWSVLLGVWP | |||||||||||||
10 | 4r0cA | 0.13 | 0.11 | 3.78 | 1.59 | SAM | ---------------------------------------ATGNYWFIIASTFLVTGLVTLITRTLTEPRLAHANTV--QIHSRAMKWTGLTLAILLAGLALLV-PGLVLIAGICGAVYGRVSGQRNSGAVITAMEVTMASMAGYLVLMFFAAQFVAWFNYSQLGLLLAVKGAAWLLPKVVLLLLFVVLTALINLMIGSASAKWSILAPVFIPMLMLLGISPEASQAAYRVGDSSTNIITPLMPYFVLVLGFAR-R-YQPEIA-LMLPYSLTLLLGWSVL---- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |