>PF03402 (265 residues) KLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIYLHRLLRG LALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVT PNLTSEDFMYVTQSCSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQ AQHLRSTSLSSKASPEQRATRTIMLLTSLFVVLYILERVVFQSRLKFKDCSVFYFVHIIM SHSYATVSPFVFICTEKHIIKFWES |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | KLLGENKPKPIDLYIAFLSLTQLMLLITMGLIAVDMFMPWGRWNSTTCQSLIYLHRLLRGLALSATCLLNVLWTITLSSRSSCLTKFKHKSPHHISGAFLFFYVLYMSFSSHVLVSIIVTPNLTSEDFMYVTQSCSLLPMSYSRESRFSTLMAIRETFLISLMALSSGYMVALLWRHKKQAQHLRSTSLSSKASPEQRATRTIMLLTSLFVVLYILERVVFQSRLKFKDCSVFYFVHIIMSHSYATVSPFVFICTEKHIIKFWES | |||||||||||||||||||
1 | 4n6hA2 | 0.12 | 0.11 | 4.01 | 2.28 | SPARKS-K | IVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRT---PAKAKLINICIWVLASGVGVPIMVMAVTRPRDG---AVVCMLQFP-SPSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSV------RLLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQ | |||||||||||||
2 | 6m9tA2 | 0.11 | 0.10 | 3.56 | 2.74 | FFAS-3D | RRRESKRKKSFLLCIGWLALTDLVGQLLTTPVVIVVYLSKQRWSGRLCTFFGLTMTVFGLSSLFIASAMAVERALAIRAP---HWYASHMKTRATRAVLLGVWLAVLAFALLPVLGVGQYTVQWPGTWCFI--------STNWGNLFFASAFAFLGLLALTVTFSCNLATIKALVS------------RGSWGRITTETAIQLMAIMCVLSVCWSPLLIMMLKMIFNEKQCNFFLIAVRLASLNQILDPWVYLLLRKILGRPLEV | |||||||||||||
3 | 4rnbA | 0.10 | 0.10 | 3.59 | 3.71 | HHpred | -WKNHHMRTVTNYFIVNLSLADVLVTIT-CLPATLDITETWFFGQSLCKVIPYLQTVSVSVSVLTLSCIALDRWYAIHP----------STAKRARNSIVIIWIVSCIIMIPQAIVMECSTVF----KTTLFTVCDERWGGEIYPMYHICFFLVTYMAPLCLMVLAYLQIFRKLWCRQGIDCSFWNESRSKQIRARRKTARMLMVVLLVFAICYLPISILNVLRVFGMDVYAWFTFSHWLVYANSAANPIIYNFLSGKFREEFKA | |||||||||||||
4 | 4n6hA | 0.12 | 0.12 | 4.11 | 1.80 | MUSTER | IVRYTKMKTATNIYIFNLALADALATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCPVKALDF----RTPAKAKLINICIWVLASGVGVPIMVMAVTRPRDGAVVCMLQFPS----PSWYWDTVTKICVFLFAFVVPILIITVCYGLMLLRLRSVR------LLSGSKEKDRSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQ | |||||||||||||
5 | 4ww3A | 0.11 | 0.10 | 3.70 | 1.68 | CNFpred | ---TKSLQTPANMFIINLAFSDFTFSLVNGLMTISCFLKKWIFGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGPMAA----SKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLE------GVLCNCSFDYRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMALRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQ | |||||||||||||
6 | 5zbhA | 0.13 | 0.12 | 4.34 | 0.86 | HHsearch-2 | ILKQKEMRNVTNILIVNLSFSDLLVAIM-CLPFTFTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLINPRGWR------PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFTLDAYKDKYVCFDQFPSDSHLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEMLRIAYDNKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVDWNHQIHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQF | |||||||||||||
7 | 4djhA1 | 0.11 | 0.10 | 3.68 | 1.94 | Neff-PPAS | ---YTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKA---LDFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDVIECSLQF-PDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLLSD-----------RNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRD | |||||||||||||
8 | 5zbhA | 0.13 | 0.13 | 4.43 | 1.38 | HHsearch | ILKQKEMRNVTNILIVNLSFSDLLVAIM-CLPFTFTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLINPRGWR------PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEPFTLDAYKDKYVCFDQFPSDSRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIFEMLRIAYDNKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVDWNHQIHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQ- | |||||||||||||
9 | 4djhA1 | 0.11 | 0.11 | 3.78 | 2.18 | PROSPECTOR2 | SIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVYLMNSWPFGDVLCKIVLSIDYYNMFTSIFTLTMMSVDRYIAVHPVKAL----DFRTPLKAKIINICIWLLSSSVGISAIVLGGTKVREDVDV-----IECSLQFPDWWDLFMKICVFIFAFVIPVLIIIVCYTLMILRLKSVRLL-----------SDRNLRRITRLVLVVVAVFVVCWTPIHIFILVEALGSAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRP | |||||||||||||
10 | 5zbhA | 0.13 | 0.12 | 4.31 | 3.29 | SAM | -LKQKEMRNVTNILIVNLSFSDLLVAIMC-LPFTFTLMDHWVFGEAMCKLNPFVQCVSITVSIWSLVLIAVERHQLINPRGWR------PNNRHAYVGIAVIWVLAVASSLPFLIYQVMTDEP-TLDAYKDKYVCFDQFPSDHRLSYTTLLLVLQYFGPLCFIFICYFKIYIRLKRRNIF-----AYDNKYRSSETKRINIMLLSIVVAFAVCWLPLTIFNTVDWNHQNHNLLFLLCHLTAMISTCVNPIFYGFLNKNFQRDLQF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |