>PF03396 (291 residues) REERILAIDLDPNIATFIKHGFNNRVRWPILNIGIILTNKTTAVNEEWLTAIEYLPTRKI FYKHTSRILRRELGFCVYLNKSQTQNKNYISLDDFDYFIIYPDNKFEKIEKPKELAATLL HTFQEYRFKNLQTIELIAFSSGTQITEDIINQLTFLNVENFNREYENIKPIIDTNFLSIV PFIVTAPLGKLTFYIEHYSWIDFKSHVKEILDYLQGCLIADIHSHKLETSVQEHASFSSY NSNSGMLFVNDLLTMTVVNFFGCDSRLNSYHKFDMSIIDIETFLKSLSEAF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | REERILAIDLDPNIATFIKHGFNNRVRWPILNIGIILTNKTTAVNEEWLTAIEYLPTRKIFYKHTSRILRRELGFCVYLNKSQTQNKNYISLDDFDYFIIYPDNKFEKIEKPKELAATLLHTFQEYRFKNLQTIELIAFSSGTQITEDIINQLTFLNVENFNREYENIKPIIDTNFLSIVPFIVTAPLGKLTFYIEHYSWIDFKSHVKEILDYLQGCLIADIHSHKLETSVQEHASFSSYNSNSGMLFVNDLLTMTVVNFFGCDSRLNSYHKFDMSIIDIETFLKSLSEAF | |||||||||||||||||||
1 | 5tscA | 0.15 | 0.12 | 4.18 | 0.54 | SPARKS-K | VGYVKKMGNMKENIAEVVRKS---EMTQP----------TNSA--GKASNEVCDLLLGTEGASEFEKNLKGSLNLLVRVEMDRFAEKNKIYLLEDQLVYLDIFGKVIDLGQTSDTCHRLFNAITTPFYQN--------YILYDEIDESAEEAAMFEMGEIVKAKMKN-----IDCWTATHSFTIFVPESTRTLYPYQAYWHTLQQWFSDKDEKLSDGYIEKLALLGTTTDS-------------------KIRSSIYGELFSPPGKEHVFCKFKVTEVNPEIALQNLEEVQ | |||||||||||||
2 | 5z72A | 0.09 | 0.05 | 2.00 | 0.57 | FFAS-3D | ----TLKLAVASIIGQHVLKTYVE--RYPNAKVSLITGWS---------------------SEMLKSLYEDQVHIGIIRGNPEWKGRKDYLMTDHLYLVDTEISCIQFKSDSTYFQEIQHWWHQKFKTSPKQTILV----DQIETCKQMALHYAILPSVTLEEEDNKMPLLDTKDHPIGRDTWLLGYEPA-----------FELKQVQAFVSVIKDML------------------------------------------------------------------------- | |||||||||||||
3 | 5h63A1 | 0.16 | 0.09 | 2.84 | 0.36 | HHpred | --------------------------------------------------------------------------------------SGHVSFAGIDYPLLNHQTPLWFERNPDRFGQPIINTYLNAIIEKERIIGIF-VDGD--FSKGQRKALG--KLE---QNYRNIKVIYNSDLNYYKGH----------------LWFDFYRNLFL----LKGSDAGKPGCHHLQPGILDA--DMLLTDKLGTLYLPDGIAIHVSR-KDNHVSLEN---------------------- | |||||||||||||
4 | 4i6jB | 0.11 | 0.10 | 3.73 | 0.54 | MUSTER | NQYVSFKVDSSKESAEAACDILSQLVNCSLKTLGLISTARPSLPKSHFISALTVVFVNPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILC----VADQCHGLRELANYHLLSDELLLALSSEKHVRLEHLRIDVVSENPGQTH--FHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEFDPFFRYEIPAT-HLYFGRSVS-KDVLGRVGMTCP-RLVEVVCANGLRPLDEELIRIAERCKN--AIGLGEVSCSAFVEFV-CGGRL---SQLSIMKYSLEQIHWEVSKHL | |||||||||||||
5 | 2db3A | 0.09 | 0.07 | 2.63 | 0.85 | CNFpred | -------------LLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFE-TSFRHQNECITRGCHVVIATPGRLLDFRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR------PEHQTLMFSAT--FPEEIQRMAGEF-------------------LKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEILSEQA------------------------DGTIVFVETRGADFLASFLSEEFPTTSIHGD-RLQSQREQALRDFKNGS | |||||||||||||
6 | 2pffB | 0.18 | 0.17 | 5.50 | 0.63 | HHsearch-2 | PTEGFAADDEPTTPAELVGKFLGYVSVEPSVDQVLNFENCYLEGNDIHAKLLENDTTKELIKNYITARIMAKRPFD---KKSNSALFRGEGNAQLVAIFGGQGNT---DDYFEELR----DLYQTYHVL---VGDLIKFSAGLNILEWLENPSYLLSIPAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAIAETDSWESFFVSVRKAITVLFFIGVRCVPSPMLSISLTKQVEISLVNGAKNLVVSNLTLRKAKAPSGLDQSRIPFSEKFSNRFLPVDLINKDLNVSF | |||||||||||||
7 | 3qslA | 0.10 | 0.09 | 3.45 | 0.59 | Neff-PPAS | -AKVQIAVGGKPLIYYLPLTIAEVKG--FFKDEGLDVSIADFAGGSKALQAVVGADVVSGAFEHTLSLQAKGQFYRAFALQGRANLPGYKGPADLKIGVTAPGSST----------NVVNFFLAKHGL-KASDVSFIGVGAGAGAVTALRSGQSNTDPVVSLETSGDIQIIVDTRTLKDTKEIFGGNPA-GCLYAPQAFVDANPNTAQALTNAIVRADKWIQKAGADEIAKAVPEGYLLGDPASPDGVIPEDGAATALKALAAFVPDFDAAKVDPAKAWTNEYTRRANEKY | |||||||||||||
8 | 2rliA | 0.07 | 0.03 | 1.28 | 0.35 | HHsearch | FRGQWVLMYFCPDCPDELEKLVQVVRQLEAEPVQPVFITVDPEDVEAMARYVQDFHRLLGLTKQVAQA-SHSYRVYYN-AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYRSAEQISDSVRRHMAAFRSVLS---------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 5yiiA | 0.09 | 0.09 | 3.26 | 0.80 | SP3 | ------WINVMNETKALMKEVMDIPEG----YEILFFGGGASLQFLMVAMNLLNKKACYLVWASKAIKEAENIGEVKIIGTSKDKNYTYIPEYQIPFHITTNNTIYGTEIRKDIESPIPLVADILSKPIDISKYSLIYAGGAAGVKKEILGKVQRKIPIILD---YQVHILNNSMYNTPPVISIFT----VNQTLKYIKKIGGLKKIQELNEEKARLLYAEIDRNKIFRGTVRKKDRSIMNEEQYKQLENEFSEYALQKGIIGIKGHRSVGGFAVTIESVQALIKCMHDFE | |||||||||||||
10 | 5njlA | 0.09 | 0.08 | 2.92 | 0.76 | PROSPECTOR2 | VKKETITKKEATELVSKVRDLMSQKYTGGSQVYEIKVGETLSKLIDELEKLVNALGE------------NKELIVTITDKGHITNSANEVVAEATE-----------KYENSADLSAEANSITEKAKTSAKDKLVITLRDKTDTVTSKTIDEKIDLTANPVDSTGTNLDPSTEGFRVNKIVKLGVAGDDVQLAEITIKNSDLNTVSPQDLYDGYRLTVKGNMVANGTSKSISDISSKDSETGKYKFTIK-------------YTDASGKAIELTVESTNEKDLKDAKAALE | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |