>PF03035 (251 residues) MASAFLAGLAGDVITNGVGSLINAGANAVNQKVEYDFNKQLQMASFKHDKEMLQSQVLAT KQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPMTKILDWNGTRYWAPNSMKTTSYSGQF SSSPVHKSPAPSHAVSSKSRLQNDSVSVYSSPSSVSSQSTHSTVLSAGTGSSRSISTSTA TPTLSRTSDWVRGQNERLSPFMDGALQTAFVTPPSSKASSNGTVSTVPKAVLDSWTPMFN THRQPLFAHLR |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MASAFLAGLAGDVITNGVGSLINAGANAVNQKVEYDFNKQLQMASFKHDKEMLQSQVLATKQLQQEMMNIRQGVLTAGGFSPADAARGAVNAPMTKILDWNGTRYWAPNSMKTTSYSGQFSSSPVHKSPAPSHAVSSKSRLQNDSVSVYSSPSSVSSQSTHSTVLSAGTGSSRSISTSTATPTLSRTSDWVRGQNERLSPFMDGALQTAFVTPPSSKASSNGTVSTVPKAVLDSWTPMFNTHRQPLFAHLR | |||||||||||||||||||
1 | 3jc8Na | 0.06 | 0.05 | 2.06 | 1.06 | SPARKS-K | AVKKREMGRQVLVLFAVVLIGAGVANYLWYDDRQSELEHQAGVASTKARIAELEKIIGEVKNINTRKAEVEKKLAVLDALRKGRSGPVRMKVWVKT-FSENNNAVSAVSHDEVAEFMRGLNGVVWTPKGMGRLDSKTARVEMLTSDATIEEFPEAQVSPFFKNIDLQTAKQVGGAQVGVPILVEFKITMTSNY---------------------------------------------------------- | |||||||||||||
2 | 2vsgA1 | 0.08 | 0.08 | 3.01 | 1.21 | Neff-PPAS | ELWQPECELTAELRKTAGVAKMKVNSDLNSFKTLELTKMKLLTFAAKFPESKEALTLRALEAALNTDLRALRDNIANGIDRAVRATAYASEAAIQTLHDATDGTTYCLSASGQGSNGNAAMASQGCKPLALPELLTEDSYNTDVISDKGFPKISPLTNAQGQGKSGECGLFQAASGAQATNTGVQ--------FSGGSRINLGLGAIVASAAQQPTRPDLSDFSGTARNQADTLYGKAHASITELLQLAQG | |||||||||||||
3 | 2vsgA1 | 0.09 | 0.09 | 3.29 | 0.99 | SPARKS-K | KYELWQPECELTAELRKTAGVAKMKVNSDLNSFKELTKMKLLTFAAKFPEAALNTDLRALRDNIANGIDRAVRATAYASEAAGALFSGIQTLHDAT----DGTTYCLSASGQGSNGNAAMASQGCKPLALPELL-TEDSYNTDVISDKGFPKISPLTNAQGQGKFQAASGAQATNTGVQFSGGSRI-------------NLGLGAIVASAAQQPTRPDLSDFS-GTARNQADTLYGKAHASITELLQLAQG | |||||||||||||
4 | 5tszA | 0.16 | 0.06 | 2.00 | 0.61 | FFAS-3D | ---EVIGNELADNIANEIVSSLQKDSASFLQS-GFDVKTQLKATAKKVLVEALKAALEPTEKIVASTIEDAYFLLGPVVKTLFNKVEDVLHKPIPDTI-WE------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
5 | 2wodA | 0.13 | 0.09 | 3.17 | 0.37 | HHpred | ALGAFLGLAVGDALGAT---------------VEFMTKGEIAQGQITDDTEM--------------SLALGRSLAAKGTLDVADICE--------EFALWLKSRPVDVGNTCRGIMHEG----TTTAPSEGDAGNGAAMRCLP--AALATLGADLEPWVLAQARIT-HNHPLSHIGGRGMKACREEANRLVHQH----RDFHFEPY------KGQ---SSAYIVDTMQTVL-------------------- | |||||||||||||
6 | 2vsgA1 | 0.12 | 0.11 | 3.94 | 0.92 | MUSTER | ELWQPECELTAELRKTAGVAKMKVNSDLNSFKTLELTKMKLLTFAAKKEALTLRALEAALNTDLRALRDNIANGIDRAVRATAYASEAA-GA-GIQTL--DGTTYCLSASGQGSNGNAAMASQGCKPLALPELLTEDSYNTDVISDKGFPKISPLTNAQGQGKSFQAASGAQATNTGVQFSGGSRIN--LGLG-------VASAAQQPTRPDLSDFSGTARNQADTLYGKAHASITELLAQGPKP------ | |||||||||||||
7 | 2fgeA | 0.11 | 0.04 | 1.31 | 0.52 | CNFpred | RFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARN--------------GCIVNMT-------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 4didB | 0.20 | 0.08 | 2.42 | 0.49 | HHsearch-2 | SNHSLLYNLQRD--------LLTVAATVLGKQDP-VMANQMELAKVKADRPATKQEEAAAKALKKNLIELIAARTQQDGLPAKEAHRFAARDAQVKQLN---NQPW------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2vsgA | 0.08 | 0.08 | 3.12 | 0.89 | Neff-PPAS | WQPECELTAELRKTAGVAKMKVNSDLNSFKTLELTKMKLLTFAAKFPKEALTLRALEAALNTDLRALRDNIANGIDRAATAYASEAAGALFSGIQTLHDATDGTTYCLSASGQGSNGNAAMASQGCKPLALPELLTEDSYNTDVISDKGFPKISPLTNAQGQGKSGECGLFQAASGAQATNTGVQ--------FSGGSRINLGLGAIVASAAQQPTRPDLSDFSGTARNQADTLYGKAHASLAQGPKPGQT | |||||||||||||
10 | 6iu3A | 0.15 | 0.11 | 3.60 | 0.43 | HHsearch | GAIVLTAGVAAGAISMGLGGYLAAKSE----ADNYARELKREQEEIIRVPDTE----------AAEVA----EILARYGIEPHEYGPVVNA--LRKPQAWLGPDPKRALTIAIAYVLGGLVPLIPYMFIPVAR--KAVV----------------AS--VILTLM--------------ALLIFGYAKGYFTD-----NKPFKSALQTALIGA---IAS---AAAFGMAK-------AVQSENLYF--Q-- | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |