>PF01940 (249 residues) LSLVIVYPAYKKDSLTISGAVTAVILGSIIYSFGSIYHFIILVSFFISSSVLTKFKEKSK EAFEKVNDKTGKRDYTQVLANGVIGAIFVLLEYVNKSPEFFLAFSVSFAVSTADTWASEI GVLSKKNPVRIITFKPVPKGISGGISSLGLFASFLGAAFISVLTFGFSFIIYKDLVMSMY FMLICMILGFLGSIIDSVLGATVQAQYLDNQTNNLTEKKITQNGNAQLVRGIRIVDNNMV NFLSNLITS |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | LSLVIVYPAYKKDSLTISGAVTAVILGSIIYSFGSIYHFIILVSFFISSSVLTKFKEKSKEAFEKVNDKTGKRDYTQVLANGVIGAIFVLLEYVNKSPEFFLAFSVSFAVSTADTWASEIGVLSKKNPVRIITFKPVPKGISGGISSLGLFASFLGAAFISVLTFGFSFIIYKDLVMSMYFMLICMILGFLGSIIDSVLGATVQAQYLDNQTNNLTEKKITQNGNAQLVRGIRIVDNNMVNFLSNLITS | |||||||||||||||||||
1 | 5wudA | 0.16 | 0.11 | 3.62 | 1.19 | SPARKS-K | FAISGAIKAVKKGMVLVLGFSTALGGGIISNLLLGKTPPTNLPITAFLASLATFVFYRIF-------TNVGKPLLYADAIGLGAFASSGASLAYSVSNNVILVVIVGAITAVGGGVIRDILS--NEVPLILTR-------------EFYATTAVIGSFVYFIASDL----SVPEDVALIVSFLITLILRILAMELKWEL-------------------------------------------------- | |||||||||||||
2 | 4he8F | 0.10 | 0.07 | 2.71 | 1.20 | CNFpred | PTPVSALIHAAT----MVTAGVYLIARSSFLYSVLPDVSYAIAVVGLLTAAYGALS-------------FGQTDIKKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFFKALLFLASGSVIHAGEQDVRKMGGLWKHLQTRWHALIGALALGGLGFWSKDAILAATLTYPFGGVGFYVGALLVAVLTAMYAMRWFVLVFLGE-------------------------------------------- | |||||||||||||
3 | 6h53A | 0.10 | 0.08 | 2.80 | 1.48 | SP3 | --TPIARGLLRVGLVTILGTTASVAGALTLFPMGKLFAGACVVWFFVLFDMLDGAMARERGGGTRF----GAVTCDRISDGAVFCGLLWWIAFHMRDRPLVIATLICLVTSQVISYIKARAEASGLRG----------------------DGGRPERLIIVLTGAGVSDFPFVPWPPALSVGMWLLAVASVITCVQRLHTVWTSPGAIDRM-------------------------------------- | |||||||||||||
4 | 4q2eA | 0.13 | 0.12 | 4.02 | 1.17 | SPARKS-K | AILILAGYELITLEMRFFYVILLALYPVLYGLVFEEPT-QPLSILFITGVVFSLITD-------KDPSQVFKTVAAFSIALIYVTFFLSFFLPIYRDFGAANALLVLTSTWVFDSFAYFTGISPRYSPRK---------------SLEGVIGGFLGVVIYTFLYRLVVNVICFR--TFLPFAATVAIMDTFGDIFECALKRHYGVKDSGKTLPGHGGMLDRIDGLLFVAPVSYIVFKILEGVVR----- | |||||||||||||
5 | 4q2eA | 0.13 | 0.11 | 3.79 | 0.96 | FFAS-3D | VSAILILAGYELITLEFFYVILLALYPVLYGLVFEEPTQPLSILFITGVVFSLITDKDPSQVFKTV--------AAFSIALIYVTFFLSFFLPIYRDFGAANALLVLTSTWVFDSFAYFTGLKFGR--------TRISPRYSPRKSLEGVIGGFLGVVIYTFLYRLVVNVNVICFRTFLPFAATVAIMDTFGDIFECAL-----------------KRHYGVKDSGKTLPGHGMLDRDGLLFVAPVS-- | |||||||||||||
6 | 4q2eA | 0.13 | 0.10 | 3.62 | 0.50 | HHpred | -VSAILILAYELTLEKERDARFFYVILLALYYGLVFPTQPLSILFITG-VVFSLITKDPSQV--------FKTVAAFSIALIYVTFFLSFFLPIYRDFGAANALLVLTSTWVFDSFAYFTGLKFGRT--------RISPRYSPRKSLEGVIGGFLGVVIYTFLYRLVVNDNVICFRTFLPFAATVAIMDTFGDIFECALKRHYGVKD----SGKTL--PGHGG-------------------------- | |||||||||||||
7 | 4q2eA | 0.14 | 0.12 | 4.11 | 0.89 | MUSTER | LVSAILILAGYE-EMKERDARFFYVILLALYPVLYGLVFEPTQPLSILFITGVVFSLITDKDPSQVFKT-----AAFSIALIYVTFFLSFFLPIYRDFGAANALLVLTSTWVFDSFAYFTGLKFGRTR-----SPRYSPR-----SLEGVIGGFLGVVIYTFLYRLVVNDLLSVNVIFLPFAATVAIMDTFGDIFECALKRHY------KDSGKTL--PGH---------G--MLD-DGLLFVAPVSYI | |||||||||||||
8 | 3rkoC | 0.06 | 0.04 | 1.95 | 1.17 | CNFpred | --WTFNYEELLNTPMVEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVD-------------------LAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQ------------------------TDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRD---------------MRMMGGLWKMKWLPALSLFFAVAT | |||||||||||||
9 | 3dh4A | 0.09 | 0.08 | 2.96 | 0.93 | HHsearch-2 | LPWWFLPIFIEKGIYTIPLMYSILGLALFALVIAGVSGIAVLGGLWVANLYWGFNQYIIQR----TLAAKSVSEAQKGIVFAAFLKLAAYVITSDADVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEPDSGDHIGQATTSKGAIIGVVASIPFALFLKFMPL-----SMPFMDQM----LYTLLFTMVVIAFTSLSTSINDDDPKGISVTSS-----------MFVTDR--SFNIAAYGIMI | |||||||||||||
10 | 5y78A | 0.08 | 0.07 | 2.91 | 0.93 | Neff-PPAS | -TLVHTLKVGFYFFLWYFFNFIFNIANKRTLNMWKYPWVLSTIQLGVGALYCTFLWVLG----LRTKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVAISFTHVVKSAEPVFGAVGSALVLGEFFH------PLTYLTTELTFTWTGFITAMISNVAFVTRNITSKFTMVDFKNEKTLIAQNTYALITIISFFMELPFALLMEGFPPLVSAIAGVSKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSP | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |