>PF01830 (243 residues) MAQLRKPSQSLVLSESVDPTTVDPFVSVRTEEVVPAGCITLWEYRDSCGDVPGPLSHGDL RRLRTPDGVCKCQVHFELPTVLKSGSTGTVPEHPAVLAAFIGRPRRCSLEQRTKELDSRF LQLVHGGLPARPSYMIARPPRPVRGLCSSRNGSLAQFGQGYCYLSAIVDSARWRVARTTG WCVRVADYLRLLQWVGRRSFGSFQIEKSAVDHVYHVVVDAEYQSEQDGALFYQAILGLAE KDP |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MAQLRKPSQSLVLSESVDPTTVDPFVSVRTEEVVPAGCITLWEYRDSCGDVPGPLSHGDLRRLRTPDGVCKCQVHFELPTVLKSGSTGTVPEHPAVLAAFIGRPRRCSLEQRTKELDSRFLQLVHGGLPARPSYMIARPPRPVRGLCSSRNGSLAQFGQGYCYLSAIVDSARWRVARTTGWCVRVADYLRLLQWVGRRSFGSFQIEKSAVDHVYHVVVDAEYQSEQDGALFYQAILGLAEKDP | |||||||||||||||||||
1 | 6djyA | 0.16 | 0.15 | 5.08 | 0.77 | SPARKS-K | RMTLKQMIQQVAINEQENELTTTPLSMPTMLGYVPLNEVATSKFFSNVNDFDRD---NQLAMAHFPDT----TITYNLTNSIKPGDTSLPDAEVAALKWFWKSINLVRQPPMDNVMYWACQFLSSGTSFLPLERDVEIVFSGFKGSHICMFSNLRQMNLSLCYYDLITNTEIRAYVDAHEELKSLLTYLCLCTIVGLCDTFTETRNMDTGEYVWKVDVVSRNHTIQNAKYMIQLVHVLLFPLT | |||||||||||||
2 | 6mzcI3 | 0.11 | 0.07 | 2.36 | 0.53 | FFAS-3D | ---------------------------------------------------------------------------------------------PAVMTCIVSRQLRPDVDNALRDFAARLVAQICKHFSTTTNNIQSRITKTFKSWVDEKTPWTTRYG-SIAGLAELGHDVIKTLIL-----PRLQQEGERIRSVLDGPVLSNHVQSLLLKHCAPVLAKLRPPPDNQGPLLCSQVVKARAQ-- | |||||||||||||
3 | 2z38A2 | 0.23 | 0.14 | 4.39 | 0.31 | HHpred | ------------------------------------------------GDLSGIISRDQFYKMLKNDNDC----------------HAVFFTYDAFITAAKSFPSFGNTAMRKKEIAAFFGQTSHETTGGWSG----A-----------PDGANTW---GYCY----DPVIAFKTAIWTQWEPSAADIS-----AGR--LPGYGVITNIINGGLE-CA-GRDAKVQDRISFYTRYCGMFGVDP | |||||||||||||
4 | 1nd4A | 0.12 | 0.11 | 3.79 | 0.52 | MUSTER | PAAWVERLFGYWAQQTIGCSDAA-LSAQGRPVTDLSGALNLSWLATTGVPCAAVLDVVT-------EAGRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARKARMPDGEDLVVT-ANIMVENGRFSG--RLGVADRYQDIALATRDI-AEELGG-EWADRFLVL-Y-----GIAAPDSQRIAFYRLLDEFF---- | |||||||||||||
5 | 4khrA | 0.10 | 0.05 | 2.00 | 0.65 | CNFpred | --------------------------------------------------------------------PMGFSYDTRFDSTV----------TESDIRTEEAIYQCCDLDPQARVAIKSLTERLYVGGPLTNS---------------------ENCGYRRCRASGV------LTTSCGNTLTCYIKARAACRAAGL---QDCTMLVYG-DDLVVICESAGQEDAASLRAFTEAMTRYSAPPG | |||||||||||||
6 | 2pffB | 0.16 | 0.16 | 5.20 | 0.66 | HHsearch-2 | LDAEKVFTQGLNILEWLENPSNTPDLSIPISVVTAKLGFTPGELRSYLTGHSQGLVTAAIAET--DSWESFFVSVRKAITVLVRCYEAYPNLPPSILEDSLGVPPMSNLTQEQVQDYVNKTNSHEISLVNGAKLVVSGPPQSLYGLNLTLRKAKAPSGLDQSPFSERKLKFSNRFLPVASPFVPASDLINKDKNNVSFNAKDIQIPV--YDTFDG--SDLRVLSGSISERIVDCIIRLPVKWE | |||||||||||||
7 | 5ue0A | 0.10 | 0.09 | 3.19 | 0.62 | Neff-PPAS | -PATAKELQAMELTAMSDQLVGADGELPAEIQAIKDALAQALKQADGLATAMGQVAFAAAVGGGSAGTAGTVQMNVQLYKTAFSSTSSSAAALSDGYSAY-------TLNSLYSESRSGVQSAISQTANPALSRSVSRSADASQRAAETIVRDSQTLGDVYSRLQVLDSLMSTIVSNPQANQEEIMQLTASISKAPQ--------------------------SVDSLQKFAAQLEREFVDGE | |||||||||||||
8 | 1wh2A | 0.21 | 0.06 | 1.96 | 0.46 | HHsearch | ---------------GSSGSSGVR-------VLSYDKEKLNWLYKDPQGLVQGPFSLTQLKAWSKQFRVWMTGESMESAVLLTD-----------VLRLS-GPSSG----------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 6fmlG | 0.10 | 0.10 | 3.64 | 0.50 | SP3 | VMQFRKPDL-FERADTSSPFFCGHFAETGSFLREGTNVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPG-----NLVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPLFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPT | |||||||||||||
10 | 6gupA | 0.06 | 0.06 | 2.65 | 0.82 | PROSPECTOR2 | WPKGGLPGILHHYTETLTTTTTRKPHSLGDGLATTSYLADLAHALQPTEQSWGLGHLDRTEKFGGSASSGKIVLMSRPNPHTHTVERMPPVSDREAIQWVLAEGLGDRTPAEIRPVFEKLTSMADADAGTDVSLVYPAHTPLSARRFLESPSEDDLFSSDLSDEQLGKTFGMIREQGLLRAWVDKDTLLSRWRNATDHNGEA----AIWDENSGIIPALSNDDQAEPRNFLVNKVLGYLSAKA | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |