>PF01573 (276 residues) SSSSFSVSYAEEMLLADEVSKTNSMSILGPNQLKLCTQLVLSNGAAPVVLSLVSKEKKSI LNRMLPKIGQRMYVHHSAIYLLYMPNILKSSSGSITLKLFNEATGELVDVDTDHDATQAC IFAGRYPRSILAKDAAKGHDLKLVVHAVASTNMNSAVGVLYPIWEDELSRKQILERGADF LKFPIAKTEPVRDLLNAGKLTDFVLNRTRLGVGSKSDPSPVLLEPRAKIAGKAKTLFIPE GPSVPSTTINGMAPTVRIDAGSPKGLGVPKGFTYES |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | SSSSFSVSYAEEMLLADEVSKTNSMSILGPNQLKLCTQLVLSNGAAPVVLSLVSKEKKSILNRMLPKIGQRMYVHHSAIYLLYMPNILKSSSGSITLKLFNEATGELVDVDTDHDATQACIFAGRYPRSILAKDAAKGHDLKLVVHAVASTNMNSAVGVLYPIWEDELSRKQILERGADFLKFPIAKTEPVRDLLNAGKLTDFVLNRTRLGVGSKSDPSPVLLEPRAKIAGKAKTLFIPEGPSVPSTTINGMAPTVRIDAGSPKGLGVPKGFTYES | |||||||||||||||||||
1 | 3iz3A | 0.09 | 0.09 | 3.29 | 0.62 | SPARKS-K | ISADFIICDQSFESMFSETISVVTTCASAAT--RALVKINHPSE------YMINSVIERLSQLGGVFYHTALLKTASQTYIYITPIPFYSNSAMINRYMTAVADPSIHTVIKGHSSPGLFCGCVDVQSAPLALSQLKSY-CSEATTWRVDSDDN--LVNIIARID---PARIALEFRTRSNTSAYHEYQRYMHREVTFIHKLMMYALIREQISLTENMTQ-VVSIGGRNLLNMKYVVIDPATRIETIEVQSRPFQFDVIMNEPNGAATPARMQMDK | |||||||||||||
2 | 4rpwA1 | 0.08 | 0.04 | 1.72 | 0.54 | FFAS-3D | ------VPFLSFFHAVRDGLSRLRD----------------------------ARDLQELCEAVVQEVRGLTGFDRAIIYRF-----DAEWNGSVIAEARDARADPYLGLHFPASDNWLRIIPTIDVSPIHLEYLHNGVQASMSISLMKD---GKLWGLISC---TQVSGTRYVPY-------------------EVRTACEFLGEVMSSLLAAK------------------------------------------------------------- | |||||||||||||
3 | 3ei2A3 | 0.07 | 0.05 | 2.09 | 0.33 | HHpred | ---------------------------TNLGPIVDMCVVDLERQGQGQLVTCSEGSLRIIIRTVYESPRKICYQEVSQCFGVLSSRIEVQEVEVHNLLIIDQHTFEVLHAH-QFLQNEYALSLVSCKL--GKD----P-NTYFIVGMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF----------------NGKLLASINST-------VRLYEWTTEKE-LRTENHYNNIMALYLKTKGDFIL------------------- | |||||||||||||
4 | 1vw1A | 0.11 | 0.11 | 3.92 | 0.72 | MUSTER | DMASKDMTPEQSNVYRDNSYQQFDTNNVRRVNNRYAEDYEIPSSVSSRKDYGWGDYYLSMVYNGIPTINYKAASSDLKIYISPKLRIIHNGYNQCNLMNKYGKLGDKFIVYTSLGVNPNNSSNKLMFYPVYQYSGNTSGLNQGRLLFHRDTTYP----SKVEAWIPGAKRSLTNQNAAIGDDYATDSLNKPDDLKQYIFMTKGTATDVSGPVEINTAISPAKVQIIVKAGGKEQTFTADKSPSFDEMNYQFNALEIDGSGLNFINNSASIDVTFTA | |||||||||||||
5 | 4g4qA | 0.10 | 0.06 | 2.15 | 0.85 | CNFpred | ------PELPEVETIRRTLLPLIVG--------KTIEDVRIF---WPNIIRHPR-DSEAFAARMIGQTVRGLERR-GKFLKFLLD--------RDALISHLRMEGRYAVASAPLEPHTHVVFCFT-------------DGSELRYRDV------RKAGTMHVYAKEEADRRPPLAELGPEPLSAFSPAVLAERAVKTRSVKALLLDCT-------------------------------------------------------------------- | |||||||||||||
6 | 2pffB | 0.13 | 0.12 | 4.28 | 0.57 | HHsearch-2 | VSSLVEPSKVQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV---KTKELIKYITARIM--AKRPFDKKSNSALVAIFLYQTYHVLV--GDLIKFSAETLSLIRTTLDAEKVFTQNTPDKDYIPISCVI-QLAHYVVTAKLLGFTPGE----LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITLFFIGVRCYLEDSLENNEGVPSPMLSISNLTQEQVQTNSHPAGKQVEISLVNGAKNLVGVRVIVAGTLDINPDDDYGF | |||||||||||||
7 | 3jc8Ma | 0.09 | 0.09 | 3.43 | 1.03 | Neff-PPAS | PEAIVDGALMNSTAIVQAVQDLMS---ELKVKGKDVAIGVSGHSVIIKKIQMPRMSQDELEESIQWEAEQYIPFDVKDVNIDTQILDGGGNDATGQMDVLLVAAKKDMINDYTTVVSEAGLAPVVVQNMFSVNYDVPERETVVLINAGASNINIISNGATVFTRDVTIGGNQFTEEIQKQLNVSYEEAEALKIGGNGADADAVVPQDVERVLSSVAEQVAGEIQRSLDFYAGTAADSNFSKPALFKTIEARTGVPVEILNPFRKIEVDNRKFDPAF | |||||||||||||
8 | 1maeH4 | 0.16 | 0.02 | 0.72 | 0.36 | HHsearch | -----------------------------------------------------------------------ISVAQD-----GGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
9 | 5njlA | 0.09 | 0.09 | 3.42 | 0.62 | SP3 | QVKKETITKKEATELVSKVRDLMSQKYTGGSQVGQPIYEIKVGETLSKLKIITN------IDELEKLVNALGENKELIVTITDKGHITNSANEVVAEATEKYENSADLSAEANSITEKAKTETNGIYKVADVKASYDSAKDKLVITLRDKTDTVTSKTIEIGIGDEKIDLTANPVDSTGTNLDPSTEGFRVNKIVKLGVAGAKNIDDVQLAEITIKNSDLNTVSPQDLYDGYRMVANGTSKSISDISSKDSETGKYKFTIKYTDASGKAIELTVES | |||||||||||||
10 | 5uvgA | 0.07 | 0.06 | 2.61 | 0.82 | PROSPECTOR2 | RVNNLFNTQARAKEIGQRIRNGAARPQIKIYIDS-----PHPDEAFDHEVSAFFPFDKRAATKLKEQLHGYFASRYPIMDVAYHCYPNKCNDDFLKVQVGSTPQDQRIVGAPQEDSAIRCGQLDLLQDWLADFRKSTSSPEELVAFDFDNCSSDQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDTNDVCTPDNLQKVLESEEGRREYL----AFPTSKSSGQKGRKELLKGNGRRMLHAEEGLCPDWKA------EVEEFSFITQLSGLRLMVSSG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |