>PF00859 (294 residues) QESFVTSGVFNVTELVQVSRTPVVTGTGPNFSLGELQGHLAYDLNPTGTGMRRTLPSTSS SGSKRHKSGSMEDDIDTSPSGEFYTSPSSPASSSRNWQEEMEGGISPTVKKTEMDKSPFS SPSPQDSSPRLSSFTQHHRPVIAVHSGISRSPHPSSSLHFPTTSILPQTASTYFPHTAIR YPPHLGAQDPLKDLVSLACDPSNQQPGPLNGSGQVKVPSHYISSQMLAPPPPPGMSRLTL PPDSKSATTTTEGGANSPTSPTYSAPGTPPANRSFVGIGPRDPGSLYQAQSWYL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | QESFVTSGVFNVTELVQVSRTPVVTGTGPNFSLGELQGHLAYDLNPTGTGMRRTLPSTSSSGSKRHKSGSMEDDIDTSPSGEFYTSPSSPASSSRNWQEEMEGGISPTVKKTEMDKSPFSSPSPQDSSPRLSSFTQHHRPVIAVHSGISRSPHPSSSLHFPTTSILPQTASTYFPHTAIRYPPHLGAQDPLKDLVSLACDPSNQQPGPLNGSGQVKVPSHYISSQMLAPPPPPGMSRLTLPPDSKSATTTTEGGANSPTSPTYSAPGTPPANRSFVGIGPRDPGSLYQAQSWYL | |||||||||||||||||||
1 | 5fvmC | 0.11 | 0.10 | 3.69 | 1.36 | SPARKS-K | --VILASAFWEAL---TGVCSRTIQHADSQVNRLEITSDKKYLAAAGHLHVRLYDIRSNNPNPVSSFEGHKGNSIAFQQENRWMVSSSE-DGTIKVWDVR---SPSVQRNYKHNAPVNEVAIHPNQGELISCDQDGNIRDLGENQCTNQLTPEDNTPLQSLSVASDGSMLVAGNNKGNCYVWRMPHHTD-----------ASTLEPVTKFKSHTKYITRVLLSVKNLATCSADHTARVWNIEDNYQLETTLDGHQRWVWDCAFSADSTACSDHYVRLWDLSTSEIVRQYGGHHK | |||||||||||||
2 | 2atyA | 0.08 | 0.08 | 3.11 | 1.23 | MUSTER | YSTPIAVGRYSTFRLIGEKSLLCITKDKVDGPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTACKTNFSMNGNKSVWCQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKESAAFPAPIEKTISKTK--GRPKAPQLYTIPPPKEQMAKDKVSMITDFFPEDITVEWNGQPAENYKNTQPIMNTNESYFVYSKLNV | |||||||||||||
3 | 3cnfT | 0.07 | 0.07 | 3.02 | 2.59 | Neff-PPAS | SHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWDVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVVQRLIPLSSSTYVQRLAAISRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNPYTYIFTTAYTS | |||||||||||||
4 | 2nbiA1 | 0.11 | 0.11 | 3.84 | 1.67 | PROSPECTOR2 | QPSDLNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPPFECSPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGESPDGSPPNCSPTMLPSPSPSAVTVPLTPAPSSAPTR--- | |||||||||||||
5 | 4nl6A | 0.11 | 0.10 | 3.48 | 1.35 | SPARKS-K | GGSGGGVPEQEDSVLFRRGTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSED--GCIYPATIASIDFKRETCVVREEQNLSDLLSPICEVANNIEQNAQENENESQVSTDESENSSDNIKPKSAPWNSFLPPPPP-MPGPRLGPG------KPGLKFNGPPPPPPPPPPHLPPFPSGPPIIPPPPPI--CPDSLDDADALGSMLISWYTGYYMGFRQNQKEGRCSHSLN----------------- | |||||||||||||
6 | 4nl6A | 0.18 | 0.14 | 4.56 | 0.63 | FFAS-3D | -----------------------------------------------------AMSSGGSGGGVPEQEDSVTGQSDDSDIWDDTALIKAYDKAVASFKHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKV----GDKCSAIWSEDGCIYPATIASIDFKR---ETCVVVYTGYGNREENLSDLLSPSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHPPFPSGPPIIPPPPPICPDSLDDADALSMLISWYM | |||||||||||||
7 | 3nvaA | 0.18 | 0.14 | 4.52 | 0.36 | HHpred | -YIVVTGGVLSSKGTLVASIGMLLKRRGYNVTAVKID--PYINVDAGTMNLERNMTKYNNAGKKDMRYASKINNAEIEIGGT---------------VGDIESLPAVRQLKLEEDNVIFVALVEYLVTGELKKPLQHSQPDFIV----GRATLPDDFTNVKVDHIVSSVETSYIKGNVGKYTKL---KDSYISRPKLIWIESTDINGVLPGFGSHNIPGICFGFQLSI----VEFARDVLLSEA----NSTEINPN-------------------------------------- | |||||||||||||
8 | 2nbiA1 | 0.13 | 0.13 | 4.58 | 1.11 | MUSTER | DECFLYSDASRPPSCLSFGRPDCDVLPTPQCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTMPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPPTPQNINCPACCAFECRPNPMFTPSPSPPICSPTMMPSPEPSSQPSDCGEVIEECPPKSDSARPPDGRPDCNVLPFPNNIGCPSCCPFE | |||||||||||||
9 | 6ayuA | 0.16 | 0.09 | 2.95 | 0.36 | HHsearch-2 | -----------HMELVRVTEAGAMAGRGPECHVLDITAPISENIRAVAKVKDLSMTVCIRPRHARIRLIT-DGDVAHSGTDLLAGIGGTPAIQAQLAPRDDAERR--KA--LEA---------------------------------------------------------------GY----DLNQVLTTEDLVSFCAT------GVTDGDLGVRYYGGCTTHSIV-------------M-RSKSGT-----------------------VR-MIEAHRLSKLNE-YSAIDFT | |||||||||||||
10 | 2bsgA | 0.07 | 0.06 | 2.74 | 2.52 | Neff-PPAS | --GILKTSLETANSDIKTIQINKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRNDLLWIKRELMKHRIINNTDVITSQGIRTIEVGNLREELVYSRLNEIDTKQTTVESDISAIKTSISIITSVNTNTDNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSWLNQIVSLLNRVSTIETSGLNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYVRKDGEWVF | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |