>PF00845 (280 residues) NYIESHRDEYQLSHDLTEIVLQFPSTASQISARLSRSCMKIDHCVIEYRQQVPINAAGTV IVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVSDSNVHQRT HFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGKWERKPIRCQSMS RVGLRGPIEIRPGESWASRSTIGIAQSEADSEVENEIHPYRHLNRLGTSYLDPGDSASMV GARRTESNITMSMGQLNELVKTTVQECINSSCQPCQAKSL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | NYIESHRDEYQLSHDLTEIVLQFPSTASQISARLSRSCMKIDHCVIEYRQQVPINAAGTVIVEIHDKRMTDNESLQASWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVSDSNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFSHVDYGKWERKPIRCQSMSRVGLRGPIEIRPGESWASRSTIGIAQSEADSEVENEIHPYRHLNRLGTSYLDPGDSASMVGARRTESNITMSMGQLNELVKTTVQECINSSCQPCQAKSL | |||||||||||||||||||
1 | 5lacA | 0.14 | 0.12 | 4.00 | 0.70 | SPARKS-K | SHIVLEPVAIKYTTRNGYIYIQFEFEACYNNGKGLLNCKNLELIRIPLKHSIPLSYNGPVTLYLSRYDTELNKDVLCVHTGFSEGHHDIKTDCGGLFDPK--------------------------GRLLGLHCAGSDDVVFGKSNI------WTSHPSEIITLNNE------INLPNPAKVVYQHPLR----NVCATLETLQHLTNKTNAKLPYDSRLLSDFN-------ITAEQYNQYGY---YIDYNNFVNNFNRYTTTTFETCIKYGLDNKKPDYY | |||||||||||||
2 | 5knlC | 0.15 | 0.09 | 3.00 | 0.47 | FFAS-3D | -----------------------SSASEQLLRK-------------QLKEIQKNPPQGFSVGLVDDKSI---------------------------------FEWEVMIIGPEDTLYEGGFF-----HATLS---FPQDYPLMPPKMKFTTEIWHPN-----VHPNGEVCISILHPPGDDKYGYEDA-----GERWLPVHSPET--------------ILISVISM-LSSPNDESPANIDAAKEFREN----PQEFKKRVRRLVRRSIEM---------- | |||||||||||||
3 | 3mi6A1 | 0.16 | 0.11 | 3.70 | 0.34 | HHpred | --PATIKAEYASLGDFPAFQVTQANG-------SRITELTYDHYQLLTGANLPSDDAQTLVVSFNDRILVLNRALSSQLDLPD-ANYDLIQFSGT---------WARERHLYRHPLRPG---QSISSLR-ASSHQQ-------NPFL--ARPQTTDEAVFGFNLVYSGNFLDAIEVDQRILTGDEFGWNLAPQATFQTPEAILSYTSAG-NQLSQQ-ASFQQH-LVNPREERA----------------------------------------------- | |||||||||||||
4 | 5az4A | 0.09 | 0.09 | 3.39 | 0.57 | MUSTER | EVTEKGVDAGSLLRDGQGIWVSYADTNKVGVNAFDPNLQQNQTAAFWGTANQKVNLDITL-VRIQNADIQSIDDAIAY----INTFTAPTRDGTGVKAVKNKDGSGIDFVNDNADGTTDNMKN-INLVVATAGELWNAVWNNNNQTFTFNNNGNGQAGTPTINKNGSSLWTATNITFTPQPPQAATNVQLTGGLNAQSSNPVDIGPMYNPDGGPAFQPGANATTRPTEPGSAAYWDAVNGGLLNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTFAAAD | |||||||||||||
5 | 3wiqA | 0.10 | 0.09 | 3.14 | 0.60 | CNFpred | --ILEFKRVLDLKQGILYRKLRLKDV---------GRITTIEGFRFVSM-----NNKNLIVQKYDVVCE------NYSAVLNVESFIDATTVNSKDVPNDRVKHYEIDKKKDF--------GIYLGITTKD-------------KKYKVGIAS----STKVLLNNQRCYFNRFTKD---YIITENFEVEAKQGERYEIEKLTVLVSSREKNVGDVFETCTNKLKEFETKSAEKLEHIEEYKRLWDVANIDIVDEVANKSVKFNIFHLISMANPEDEHVSL | |||||||||||||
6 | 2pffB | 0.20 | 0.18 | 5.83 | 1.06 | HHsearch-2 | AY--STRP-LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEPSSLVEPSKVG-----------QFDQVLNLCLT--EFENCYLEALAAKLLQENDTTL--VKTKELIKNYIT----ARIMAKR--PFDKKSNSALFRAQLVAIFGGQGNTDDRDLYHVLVGDTLSELIRTTLDAEKVFTQGLNILENTPDKDYLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELHSQGLVTAVAIAETDSWESFFVSVRITVLFFIGVRCYEAYPNTSLPPSI | |||||||||||||
7 | 1dgiR | 0.07 | 0.07 | 2.78 | 0.90 | Neff-PPAS | --VQAPTQVPGFLGDSVTLPCYLQV---------PNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRM---FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATDARSNPEPTGYNWSMGPLPPFAVAQGAQLLIRPVDKPINTTL | |||||||||||||
8 | 1yrvA | 0.15 | 0.08 | 2.76 | 0.32 | HHsearch | --------------------VPRGSMHGRAYLLLHRDFCD----------------------------------LKEN--NYKGI-----TA---KPVSEDMMEWEVEIEGLQNSVWQGLV---FQLTIHFT-----SEYNYAPPVVKFITIPFHPN-VDP---HTGQ----P---------CI---DFLDNPEKWNTNYTLSS--------I---LLALQVMLS-NPVLENPVNAARILVK---------DESLYRTI-----LRLFN----------- | |||||||||||||
9 | 5demA | 0.11 | 0.09 | 3.35 | 0.70 | SP3 | ----------------SLID---PRAIIDPSARLAADV-QVPWSIVG--AEVEIGE-GTVIVVLKPTKIGKH-------NR-IYQFSSVGEDTPDLKYKGEPTRLVIG---DHNVIREGVTIHRGT-----VQDRAETTIG---DHNLIMAYAHIGHDSNHCILVNNTALAGHVDDWAIGYTLVHQYCRIGAHSFSGMGSAIGKDVPAFGNPAEARSMNFEGMRRRG---FSSEAIHALRRAYKVVYRQGHTVEEALAELAESAAQFPEVAVIQSATRGI | |||||||||||||
10 | 5oacA | 0.09 | 0.09 | 3.26 | 0.91 | PROSPECTOR2 | MTIKYLSSETEKLMNQTVSGIDVCFTLIGVDDDSFASGSKNDYISDTPKFLDPSNVHIKATLKRGGKDITQGRDQWEEGVKLAAKEMVHLVYIPFSGNTNWPAH----INLKDND--------VLEVYVNVVRGAYGAELDANACICDVRTSPSIGVEMTSYSIRANQATDLVNLGNDVTRIALLSMTNDVSNIPNAFTDSSDRLDKNFNSNQLILEHSKCIEDSVRSHANEVDNPAKIRENTIVRSHFQTSLEILQKAVAMEEKHQSADI---AKVPAT | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |